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Pfu polymerase

Manufactured by Transgene
Sourced in China

Pfu polymerase is a high-fidelity DNA polymerase enzyme derived from the thermophilic archaeon Pyrococcus furiosus. It exhibits excellent proofreading activity, resulting in a low error rate during DNA amplification. The enzyme is well-suited for applications requiring accurate DNA replication, such as PCR and site-directed mutagenesis.

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5 protocols using pfu polymerase

1

Bacterial Mutant Strain Generation Protocol

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Bacterial mutant strains were generated as described by Baba with minor modifications [50 (link)]. Two fragments flanking the target gene were amplified from the chromosomal DNA of Xoc BLS256 using Pfu polymerase (TransGen Biotech, Beijing, China) and the primers described in S2 Table. The PCR products were digested, subcloned into the suicide vector pKMS1 [51 (link)], and introduced into bacteria by electroporation (Bio-Rad Laboratories Inc., Hercules, CA, USA) with kanamycin selection. A single transformant with kanamycin resistance was selected, cultured for 8 h in NB, and inoculated as 10-fold dilutions to NA with 15% sucrose to obtain sucrose-insensitive clones. For site-directed mutagenesis, plasmids were modified with the Fast Mutagenesis System (Transgen Biotech, Beijing, China) to obtain clones containing point mutations (Xonc3711*, 3982*, xopC2*; S1 Table).
To obtain the Xonc3711 overexpression mutant (Xonc3711OE), the full-length corresponding gene was amplified, and the fragment was cloned into pHM1 with the lac promoter. The recombinant plasmid was transferred into WT by electroporation, and transformants were screened on NA plates supplemented with spectinomycin.
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2

Synergistic Bioremediation: Engineered E. coli Strain

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Escherichia coli strains T1 (Transgen Biotech, Beijing, China) and BL21 (DE3) (Novagen, Madison, USA) were used for plasmid construction and production of PHA granules, respectively. The pACYCDuet-1 and pETDuet-1 vectors (Novagen), both with two sets of T7 promoter, were used for co-expression of target genes. These two plasmids have different replicons, thus can exist in one E. coli cell. The gene encoding organophosphorus hydrolase was amplified from the previously constructed pET-opaa4301 plasmid [22 (link)]. The PHA granule synthesis genes, phaC, phaA, phaB, and phaP, were amplified from Cupriavidus necator ATCC 17699, the most investigated poly(3-hydroxybutyrate) producer [23 (link)]. The oligonucleotide primers used in this study are listed in Additional file 1: Table S1. Gene manipulation reagents, including T4 DNA ligase, restriction endonuclease, Pfu polymerase, and seamless assembly kit, were all purchased from Transgen Biotech.
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3

Generation and Complementation of Xosr001 Mutant

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The ΔXosr001 mutant strain was generated as described by Baba et al. (2006 ) with minor modifications. Two fragments flanking the target gene were amplified from the chromosomal DNA of Xoc BLS256 using Pfu polymerase (TransGen Biotech) and the primers described in Supplemental Table 2. The PCR products were digested, subcloned into the suicide vector pKMS1, and introduced into bacteria by electroporation (Bio-Rad Laboratories) with kanamycin selection. A single transformant with kanamycin resistance was selected, cultured for 8 h in NB, and inoculated as 10-fold dilutions on NA plates supplemented with 15% sucrose to obtain sucrose-insensitive clones.
To obtain the Xosr001 complementary mutant (ΔXosr001-pXosr), the full-length corresponding gene was amplified, and the fragment was cloned into pHM1 with the lac promoter. The recombinant plasmid was transferred into ΔXosr001 by electroporation, and transformants were screened on NA plates supplemented with spectinomycin.
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4

Monoclonal Antibody Production Protocol

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DNA markers, pfu polymerase and Escherichia coli (Trans 10 and BL21) chemically competent cells were obtained from TransGen Biotech. Ni-Resin, Superdex 200 and Protein A-Sepharose columns were purchased from GE Healthcare. A protein marker was purchased from Fermentas. HyClone DMEM and fetal calf serum (FCS) were purchased from Thermo. All reagents were of analytical grade. Complete and incomplete Freund’s adjuvant, 50% polyethylene glycol (PEG), hypoxanthine/aminopterin/thymidine (HAT) and hypoxanthine/thymidine (HT) were obtained from Sigma-Aldrich and proteinase inhibitor cocktails from Roche. Goat anti-mouse immuno-globulin horseradish peroxidase conjugate was obtained from Univ-bio (Shanghai, China) and avidin-horseradish peroxidase conjugate from Invitrogen. BABL/c mice were obtained from SBF company (Beijing, China).
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5

Constructing Mutant Strains of X. oryzae

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Mutant strains were constructed as described previously (14 (link)). The coding region of xfeA was first amplified from X. oryzae pv. oryzicola BLS256 with primers xfeA F/R (see Table S2 in the supplemental material), digested with SalI/XhoI, and subcloned in pKMS1 (45 (link)). The Fast Mutagenesis System (TransGen Biotech, Beijing, China) was used to obtain clones with the T408A and T408silent point mutations. Primers T408A F/R and T408silent F/R were used to introduce point mutations into xfeA by PCR (Table S2), and mutated xfeA alleles were introduced into BL256 by double homologous recombination as described previously (14 (link)).
The methyl-accepting chemotaxis proteins, Xoc_2282 and Xoc_2291, were overexpressed in E. coli BL21(DE3). Full-length fragments of xoc_2282 and xoc_2291 were amplified with Pfu polymerase (TransGen Biotech, Beijing, China) using the xoc2282 and xoc2291 F/R primers (Table S2). These fragments were cloned, digested with BamHI/HindIII, ligated into pET-30a(+), and then transformed into E. coli BL21(DE3) by heat shock at 42°C for 45 s. Transformants were selected on LB agar with kanamycin.
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