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7 protocols using anti hla abc

1

Flow Cytometric Immunophenotyping of Cells

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Live cells (105–106) were suspended in 100 μL PBS, mixed with 3 μL fluorescein isothiocyanate (FITC)-conjugated antibody, and subsequently incubated in the dark at 25°C for 30 min. The antibodies used were anti-CD133/1-VioBright/FITC (Miltenyi Biotec), anti-HLA-ABC (BD Biosciences, Franklin Lakes, NJ, USA), anti-HLA-DR (BD Biosciences), anti-CD34 (BD Biosciences), anti-CD45 (BD Biosciences), anti-CD73 (BD Biosciences), and anti-CD105 (BD Biosciences). After 30 min, the cells were washed with 3 mL PBS and analyzed using the MACSQuant VYB (Miltenyi Biotec).
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2

Mapping HLA-Restricted T Cell Epitopes

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To determine HLA I-restricted epitopes from CD8+ T cells, a B cell panel containing autologous and allogeneic BCL was used. BCL were pulsed with the specific peptide for 1 h at 10 μg/mL, washed, and then cocultured with CD8+ T cell clones in an IFN-γ ELISpot assay. To determine HLA II-restricted epitopes from CD4+ T cell clones or lines, autologous BCL were blocked with 10 μg/mL of either anti-HLA-A/B/C (BD Biosciences), anti-HLA-DP (Abcam), anti-HLA-DQ (BioLegend), anti-HLA-DR (BioLegend), or anti-HLA-DP/DQ/DR (BioLegend) antibodies for 30 min and then pulsed with the specific peptide for 1 h at 10 μg/mL. Pulsed BCL (1 × 103 cells/well) were then washed 3 times with R10, mixed with CD4+ T cells (1 × 104 to 2 × 104 cells/well), and tested in IFN-γ ELISpot assay in the presence of 10 μg/mL of anti-HLA antibodies.
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3

Multiparameter Flow Cytometry of Immune Cells

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Cells were washed with fluorescence-associated cell sorting (FACS) buffer (BD Bioscience, 554656) and blocked with Fc blocker (BD Bioscience, 564220) for 30 min at room temperature. Cells were stained with fluorescence-conjugated primary antibodies for 30 min on ice, washed twice with FACS buffer, and fixed with 2% PFA for 15 min. For non-conjugated primary antibodies, the cells were incubated with primary antibodies overnight at 4°C and incubated with secondary antibodies for 60 min at room temperature. Samples were analyzed using a CytoFLEX flow cytometer (Beckman Coulter). Primary antibodies used were as follows: anti-CD107a (BD Biosciences, 560664), anti-IFNγ (BioLegend, 554701, San Diego, CA, USA), anti-NKG2A (BioLegend, 375103), anti-CD96 (BioLegend, 562379), anti-NKG2D (BD Biosciences, 557940), anti-CD16 (Invitrogen, MHCD1604), anti-ULBP-1 (R&D Systems, MAB1380), anti-ULBP-2/5/6 (R&D Systems, MAB1289), anti-ULBP-3 (R&D Systems, MAB1517), anti-MIC-A/B (Invitrogen, 12-5788-42), anti-HLA-ABC (BD Biosciences, 557349), anti-HAL-E (Invitrogen, 12-9953-41), anti-HLA-G (Invitrogen, 12-9957-41), and CXCR6 (BioLegend, 151103). For CD107a and IFNγ staining, cells were treated with brefeldin A (BioLegend, 420601) for 5 h before incubation with the primary antibody.
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4

Identification and Cell Cycle Analysis of Cancer Stem Cells

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Cancer stem cells were identified as ALDHhighCD44high cells, as we described [28 (link)-30 (link)]. Single-cell suspensions were obtained from the digestion of xenograft tumors or from the UM-HMC-3B cell line. Cells were counted, resuspended at 2×106 cells/ml PBS, and incubated with activated Aldefluor® substrate (BAA) or the ALDH inhibitor (DEAB) for 45 minutes at 37°C, using the Aldefluor® kit (StemCell; Vancouver, BC, Canada). Cells were exposed to anti-CD44 antibody (APC-Cat #559942, PE-Cat #550989) for 30 minutes at 4°C. Anti-HLA-ABC (PE-Cat #560168; BD Pharmingen) was used to separate human cells from mouse cells, and 7-AAD (Cat #00-6993-50; eBiosciences, San Diego, CA, USA) staining was used to exclude dying cells. To measure the effect of drugs on cell cycle, UM-HMC-3B cells were treated with tocilizumab, cisplatin, paclitaxel, or controls diluted in cultured medium. After 24 hours, cells were retrieved, exposed to a hypotonic solution of propidium iodide containing 0.1% sodium citrate, 25 μg/ml propidium iodide, 100 μg/ml RNase A, and 0.1% Triton X-100. Cell cycle analysis was performed by flow cytometry, as described [50 (link)].
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5

Quantifying Human Hepatocytes by FACS

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After dissociation, cells were stained on ice for 30 min with anti-mouse/human CD324 (Biolegend) and anti-HLA-ABC (BD Biosciences) antibodies to determine human hepatocyte percentage. Cells were then washed twice with 1× PBS and resuspended in 1× PBS supplemented with 0.5% FBS and 2 mM EDTA. Cells were acquired using FACS-LSRII flow cytometer (BD Biosciences) and analyzed with FlowJo software (version 10.1; Tree Star Inc.).
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6

Immunophenotyping of Tumor Cells

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Cell lines were collected by trypsinization (Trypsin-EDTA, Thermo Fischer Scientific) and patient spheroids were digested using TrypLE (Thermo Fischer Scientific) and rested before the staining. Tumor cells were stained with viability cell dye (Zombie NIR, Biolegend) before the staining with anti-CD155 (Clone SKII.4), anti-CD112 (Clone TX31), anti-B7-H6 (Clone # 875001), anti-CD58 (Clone TS2/9), anti-MICA/B (Clone GD4), anti-HLA-ABC (BD Biosciences), anti-PD-L1 (Clone MIH2), anti-HLA class I Bw4 (Clone REA274), anti-HLA-E (Clone 3D12), and anti-EGFR (Clone AY13). Staining of patient derived tumor spheroids was subjected to sample availability.
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7

Flow Cytometric Analysis of MICA, MICB, and HLA Expression

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Cells were washed with ice cold phosphate buffered saline (PBS) and incubated with: (1) Alexa Fluor 488 conjugated MICA antibody (FAB1300G, R&D Systems, Minneapolis, Minnesota, USA), Alexa Fluor 488 conjugated MICB antibody (FAB1599G, R&D Systems) or IgG2B isotype control antibody (IC0041G, R&D systems) and (2) anti-HLA-E (342603; BioLegend, San Diego, California, USA), anti-HLA-ABC (555552; BD Biosciences, San Jose, California, USA) or an IgG1 isotype control antibody (555748; BD Biosciences) for 30 min on ice. Antibodies were diluted in 1% BSA/PBS. Dead cells were stained with eBioscience 7-AAD viability staining solution (00-6993-50, Invitrogen). Cells were analyzed by MACSQuant Analyzer 10 Flow Cytometer (Miltenyi Biotec). Measurement of geometric MFI was performed with FlowJo V.10.6.2 (BD Biosciences) software.
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