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6 protocols using click it plus opp alexa fluor 594 protein synthesis assay kit

1

Microscopic Analysis of SMPX-V5 Overexpression

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For microscopic analyses, HeLa cells were plated on coverslips in 24-well plates and transfected with SMPX-V5 constructs (500 ng/well) using FuGENE 6. Three days after transfection, the cells were treated with 20 µM MG132 (Sigma-Aldrich) for 2 h or left untreated. Cells were washed with PBS and fixed with 4% PFA for 15 min. Immunofluorescence stainings were performed with the following antibodies: V5 mouse mAb (RRID:AB_2556564), V5 rabbit pAb (Sigma-Aldrich AB3792, RRID:AB_91591), TIA1 goat pAb (Abcam ab61700, RRID:AB_945832), TIAL1 rabbit pAb (Abcam ab26257, RRID:AB_470826), TIAL1 rabbit mAb D32D3 (RRID:AB_10839263), G3BP mouse mAb (Abcam ab56574, RRID:AB_941699), HNRNPA1 mouse mAb 9H10 (Abcam ab5832, RRID:AB_305145), eIF3η goat pAb (RRID:AB_671941), and Oligomer A11 rabbit pAb (Thermo Fisher AHB0052, RRID:AB_2536236). Nascent proteins were labeled and detected with the Click-iT Plus OPP Alexa Fluor 594 Protein Synthesis Assay Kit (Thermo Fisher) according to the manufacturer’s instructions. Images were acquired with Zeiss Axio Imager M2 using 40× NA 1.30 and 20× NA 0.80 objectives, or with a Leica TCS SP8 confocal microscope using a 40× NA 1.10 objective (Leica Microsystems).
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2

Protein Synthesis Imaging in Fly Brains

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The protein synthesis in fly brains was assessed using the Click-iT Plus OPP Alexa Fluor 594 Protein Synthesis Assay Kit (Thermo Fisher Scientific, C10457). Fly brains were dissected in Drosophila medium (Gibco, 21720024) and then incubated in a medium containing 1:1000 (20 µM) of Click-iT OPP reagent at room temperature for 30 min. The brains were washed three times with PBS, and then fixed with 4% PFA (Biosharp, BL539A) for 1 hr at room temperature. The brains were permeabilized and blocked in 5% BSA (Biofroxx, 4240GR005) in 0.3% PBST (PBS with 0.3% Triton X-100) for 90 min at room temperature, and then washed three times with PBS. The brains were incubated with primary antibodies (GFP, 1:200, Cell Signaling Technology, 2955) overnight at 4℃, washed three times with PBS, and incubated with secondary antibodies (1:200, Thermo Fisher Scientific) and DAPI (1:500, Sigma, D9542) for 1 hr at room temperature. For the Click-iT reaction, brains were incubated in the Click-iT reaction cocktail in the dark at room temperature for 30 min. Brains were then washed three times with PBS and imaged by confocal fluorescence microscopy (ZEISS LSM880).
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3

Aldefluor-based Cell Sorting and Protein Synthesis Assay

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Tumour-derived cells and primary lines were cultured in vitro for <5 passages prior to experimentation. Aldefluor-based cell sorting (Stem Cell Technologies) was performed according to the manufacturer’s instructions. Cells showing a fluorescence signal above the average of the diethylaminobenzaldehyde-treated negative controls were considered positive. Protein synthetic rate was assessed using the Click-iT Plus OPP Alexa Fluor 594 Protein Synthesis Assay Kit (Life Technologies) according to the manufacturer’s instructions. The rate of incorporation of OPP was assessed by FACS analysis. Cells cultured in the presence of 20 μM Cycloheximide (Sigma Aldrich) were used as negative technical controls. After staining, samples were acquired using a BD FACS Canto II flow cytometer. Cell sorting experiments were performed using BD Influx cell sorter. For details see ref. 49 (link). Data were analysed by FlowJo (Tree Star).
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4

Apoptosis, Cell Cycle, and Translation Assays in mESCs and MEFs

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For apoptosis and cell cycle assays, mESCs grown in serum LIF for 5 d were stained with Annexin V/propidium iodide according to the manufacturer's protocol (Annexin V apoptosis detection kit FITC, eBioscience), fixed in ethanol, and stained with PI followed by flow cytometry analysis.
For translation assays mESCs grown in Serum LIF for 8 d and primary MEFs (passage 4) were stained with Click-iT Plus OPP Alexa fluor 594 protein synthesis assay kit (Life Technologies). Cells were incubated with OPP (20 μM final concentration) for 30 min, fixed with ethanol, and processed according to the manufacturer's instructions.
Events were recorded by the FACSAriaIII sorter and analyzed with the FlowJo 10.6.1 software. Sequential electronic gating was performed to obtain single cells. Cell cycle analysis was performed in FlowJo 10.6.1, statistical analysis for translation assay was performed in R.
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5

Puromycin Assay for Protein Synthesis Quantification

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OPP puromycin assay (Click-iT Plus OPP Alexa Fluor 594 Protein Synthesis Assay Kit, Life Technologies, Cat. #C10457) was performed following the manufacturer’s instructions in primary human CD4+ T lymphocytes treated with TGF-beta and/or RAD001 and activated as detailed above. Two different donors were used. In brief, treated cells at d 12 of differentiation were incubated with component A of the kit for 30 min at 37 oC and 5% CO2, and then fixed with 3.7% formaldehyde and permeabilized with 0.5% Triton X-100. Click-iT Plus reaction cocktail was added to the samples and incubated 30 min at room temperature, protected from light. After washing, cells were stained with FITC mouse anti-human CD4 (BD Pharmingen, Cat. #555346) and APC mouse anti-human CD25 (BD Pharmingen, Cat. #555434), both diluted in Stain Buffer (BD Pharmingen, Cat. #554656). Cells were analyzed by flow cytometry as detailed above.
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6

Protein Synthesis Analysis via Click-iT

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For new protein synthesis analysis and imaging, we used Click-iT Plus OPP Alexa Fluor 594 Protein Synthesis Assay Kit (Life Technologies, Carlsbad, CA). In this assay, OPP (O-propargyl-puromycin) is efficiently incorporated into newly translated proteins that can be detected by fluorescently labeled Alexa Fluor dye. One microliter of OPP reagent (200 µM in PBS) was injected into the vitreous body per eye. One hour after injection, eyes were dissected out after perfusion and were post-fixed in 4% PFA for 4 hr. OPP detection was performed according to the manufacturer’s protocol. Retinas were subsequently immunostained with the Tuj1 antibody to label RGCs.
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