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38 protocols using dapi fluoromount g mounting medium

1

Immunocytochemistry of Connexin-43 in Glioblastoma

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Differentiated glioblastoma cells were seeded in 24-well plates (Sarstedt, Nümbrecht, Germany) with a density of 1500 cells/well, on glass coverslips (Langenbrinck GmbH, Emmendingen, Germany). Cells were fixed with 4% paraformaldehyde at room temperature (RT) for 20 min. The cells were then permeabilized with 20% Methanol for 15 min. To block unspecific binding of antibody, cells were then incubated with 20% Bovine serum albumin (BSA) at RT for 60 min. Primary antibody mix (200 μL; rabbit polyclonal anti-connexin-43 (Sigma, St. Louis, MO, USA) and rabbit monoclonal ß-tubulin (Cell signaling, Cambridge, UK), dilution 1:1000) was added to each coverslip containing wells and incubated at 37 °C for 60 min. Incubation with secondary antibodies (goat anti-rabbit Alexa Fluor 488 and Alexa Fluor 647 (Sigma, St. Louis, MO, USA), dilution 1:1000) was performed at RT for 60 min. DAPI Fluoromount-G® mounting medium (SouthernBiotech, Birmingham, AL, USA) was used for nuclei staining. Images were taken with the use of AX 70 microscope and processed with Zeiss Zen software (Carl Zeiss Microscopy GmbH, Oberkochen, Germany). Fluorescence intensity was calculated as follows: integrated density—(Area of selected cells × mean fluorescence of background).
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2

Visualization of Nuclear ISG20 Localization

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Stable or transfected cells were directly grown on coverslips for at least twenty-four hours prior to fixation in cold methanol for 10 min at -20°C (HeLa or HEK293T cells, respectively). When indicated, a prior permeabilization step was carried out to evidence the strong association of ISG20 to nuclear bodies. In this case, cells were transfected in duplicate and while one aliquot was immediately fixed, the other was first washed in cold wash buffer (PBS, 0.2% Tween 20) and further permeabilized in cold PSB containing 0.5% Triton-X100 for 5 min on ice. Cells were then fixed and incubated with the indicated antibodies (see relevant section above). DAPI Fluoromount G mounting medium was used (0100, Southern biotech). Images were acquired using a spectral Zeiss LSM710 or LSM800 confocal microscopes and analyzed using the Fiji software. For P bodies analyses, cells were fixed first in 4% paraformaldehyde, then in 70% methanol (10 min each), followed by permeabilization in cold PSB containing 0.5% Triton-X100 for 5 min on ice.
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3

Synchronized U251MG Cell Imaging

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U251MG cells growing on glass cover slips were synchronized by double thymidine block (2 mM), released for 9 h and treated with DMSO, 100 nM paclitaxel, or 8 μM 6, 11 or 22 for 15 h. Cells were fixed with 4% paraformaldehyde for 10 min, permeabilized with 0.1% Digitonin/PBS for 10 min and washed three times with PBS-T (PBS Tween-20). Slides were then blocked in 0.2% bovine serum albumin for 30 min and incubated with anti-β-tubulin and MAP1B antibodies at 1:350 and 1:300 dilution, respectively, in PBS-T for 1 h at room temperature. Subsequently, cells were rinsed three times with PBS-T and incubated for 1 h with Alexa Fluor 546 (donkey anti-mouse) and Alexa Fluor 633 (donkey anti-goat) (Molecular Probes/Invitrogen, Carlsbad, CA) secondary antibodies for β-tubulin and MAP1B detection, respectively, at room temperature in the dark. Specimens were then washed three times with PBS-T, mounted on slides with DAPI Fluoromount-G mounting medium (Southern Biotech, Birmingham, AL), and examined under a Leica TCS SP5 confocal microscope (Leica, Germany). Images were captured and processed using Leica LAS AF Lite software.
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4

Verification of Electrode Placements

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Electrode placements were verified after behavioral experiments by visual examination of electrolytic lesions. Mice were anesthetized with ketamine/xylazine mix, and lesions were induced by passing 50 μA current through an electrode for 20 seconds. Mice were transcardially perfused with PBS, followed by 4% paraformaldehyde in PBS. Brains were fixed in 4% paraformaldehyde at 4°C overnight and cryoprotected in 30% phosphate-buffered sucrose for 3 days at 4°C. Brains were sectioned (40 μm) using a cryostat and mounted with DAPI Fluoromount-G mounting medium (Southern Biotech, Cat. #: 0100-20). Only recordings from verified recording sites were used for analyses.
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5

Apoptosis Detection in HT29 Cells

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For apoptosis investigation, an ApopTag® Plus Peroxidase In Situ Apoptosis detection assay (Merck Millipore) was performed. After incubation of HT29 cells with PDGF (100 ng/ml), VEGF (100 ng/ml) or VEGF + PDGF and simultaneous incubation of Akt inhibitor (10 μM) or PI3K inhibitor (80 nM) for 2 hours, cells were fixed with formaldehyde overnight. Staining procedure was performed according to the manufacturer's instructions. For immunofluorescence staining, a DyLight®594 Anti-Digoxigenin/Digoxin antibody (Vector, Burlingame, Ca, USA) and DAPI Fluoromount G mounting medium (Southern Biotech, Birmingham, Al, USA) was used. An Olympus BX51 microscope and the CellSens Dimension software was used for visualization, magnification x10.
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6

Intestinal Immune Cell Profiling

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Small intestine was dissected out and intestinal contents flushed with cold PBS. The small intestine was opened lengthways and cut into 3-cm long pieces, washed three times in cold PBS, and placed in 4% paraformaldehyde (ThermoFisher #28906) overnight at 4°C. Small intestine pieces were then washed with PBS and placed in 30% sucrose-PBS overnight. Swiss rolls were formed, embedded in 7.5% gelatin (Sigma) and 10% sucrose, and then flash frozen in a -40°C isopentane (Sigma) bath. The embedded Swiss rolls were then cryosectioned at 20 μm using a Leica CM3050 S Cryostat onto SuperFrost Plus Adhesion Slides (ThermoFisher #28906). Cryosections were washed three times with 1% Triton X-100 (BDH) in PBS. Sections were blocked with 2% goat serum (ab7481, Abcam) in PBS. Antibody staining was performed in blocking solution: anti-CD11b PE (BD Biosciences, 553311, M1/70), anti-Gr1 FITC (eBioscience, 11-5931-85, RB68C5), and anti-CD3 FITC (Biolegend, 100306, 145-2C11). Antibodies were added overnight at 4°C. Sections were washed three times for 15 minutes each with PBS. Slides were mounted in DAPI Fluoromount-G Mounting Medium (Southern Biotech).
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7

Histological Verification of Optogenetic Implants

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Recording sites were histologically confirmed by visual examination of electrolytic lesions. Lesions were induced immediately before perfusions by passing current through an electrode at each implanted site (50μA, 20sec). Perfused and fixed tissue was then sectioned and mounted with DAPI Fluoromount-G mounting medium (Southern Biotech). Native fluorescence of Arch and eYFP was imaged using an epifluorescence microscope.
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8

Quantifying Cardiac Capillary Density

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Cardiac capillary density was measured by biotinylated Isolectin B4 staining as previously described [22 (link)]. Slides were incubated with the fluorescein-labeled Griffonia Simplicifolia Lectin I (GSLI) Isolectin B4 (FL-1201, 1: 50, Vector Laboratories, USA) overnight at 4°C and sealed with DAPI Fluoromount-G® mounting medium (Southern Biotech, USA). To measure the capillary density quantitatively, slides were examined in a blinded way using a fluorescence microscope under 400× magnification. Isolectin B4-positive cells were captured by Image Pro Plus software (version 6.0) in 3 tissue sections per group. Three randomly selected fields in the infarct, peri-infarct, and remote zone were examined in each section. The capillary density was expressed in capillaries per square millimeter.
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9

Quantifying PCNA Expression in Cells

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Cells were plated in 24-well plates and allowed to grow for 18–24 hours. Cells were fixed with chilled methanol for 5 min at room temperature and rinsed by PBS for three times. Then cells were blocked with 5% normal goat serum, 0.3% Triton X-100 in PBS at room temperature for 1 hour. Anti-PCNA antibody (Abcam, ab92552) incubation was performed for 2 hours at room temperature. After washing with PBS, rhodamine-conjugated goat anti-rabbit antibody (Proteintech, SA00007-2) was applied at room temperature for 1 hour in a dark place. Cells were washed with PBS for three times and then mounted with DAPI Fluoromount-G mounting medium (Southern Biotech, 0100–20). Finally, cells were photographed with a fluorescence microscopy (Olympus IX83; magnification: 200 ×; objective: LUCPlanFl20XPh; filter setting and timing: DAPI: BA420 filter and 220ms, PCNA: BA590 filter and 360ms; camera: DP80; exposure and image analysis: cellSens software; pixel size: 12.5 megapixel color CCD). Total 600 cells were imaged.
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10

Cell Proliferation Assay with BrdU Labeling

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Cells were seeded on glass cover slips in 24-well plates and synchronized by serum starvation for 18 h. Following a 9 h recovery period, cells were untreated (DMSO) or treated with 5 µM 15α-MP for 17 h and subjected to fixation. Two hours prior to fixation, BrdU (10 µM) was added to the culture media. Cells were fixed in 4% paraformaldehyde for 10 min, permeabilized by adding 1.5 M hydrochloric acid, blocked with 5% goat serum in 0.3% Triton X-100 in PBS, and stained with anti-BrdU antibody (Cell signaling Technology, Danvers, MA) overnight at 4°C according to the manufacturer’s protocol. The coverslips were mounted on microscope slides using DAPI Fluoromount-G mounting medium (Southern Biotech, Birmingham, AL). Images were visualized with an Olympus IX71 inverted fluorescence microscope (Olympus, Japan) and taken using a Retiga 2000R (Q Imaging, Surrey, Canada) mounted camera. Cells were counted using the ImageJ software (National Institutes of Health, NIH, Bethesda, MD).
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