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Hitrap q hp

Manufactured by GE Healthcare
Sourced in United States, Georgia, Sweden, United Kingdom

HiTrap Q HP is a strong anion exchange chromatography column designed for the purification of proteins, peptides, and other biomolecules. The column matrix is composed of highly cross-linked agarose beads with quaternary ammonium ligands, providing a high binding capacity and excellent resolution. The column can be used for protein fractionation, desalting, buffer exchange, and other purification applications.

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121 protocols using hitrap q hp

1

Purification of SYCE2 and TEX12 Proteins

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Sequences corresponding to regions of human SYCE2 (full-length, 1-218; core, 57-165; ΔS2C, 57-154) and TEX12 (full-length, 1-123; ΔCtip, 1-113; core, 49-123; core ΔCtip, 49-113) were cloned into pRSF-Duet1 (Novagen®) expression vectors for expression as TEV-cleavable N-terminal MBP- and His6-fusion proteins, respectively. Constructs were co-expressed in BL21 (DE3) cells (Novagen®), in 2xYT media, induced with 0.5 mM IPTG for 16 hours at 25°C. Cells were lysed by sonication in 20 mM Tris pH 8.0, 500 mM KCl, and fusion proteins were purified from clarified lysate through consecutive Ni-NTA (Qiagen), amylose (NEB) and HiTrap Q HP (GE Healthcare) ion exchange chromatography. Affinity tags were removed by incubation with TEV protease and cleaved samples were purified by HiTrap Q HP ion exchange chromatography and size exclusion chromatography (HiLoad™ 16/600 Superdex 200, GE Healthcare) in 20 mM Tris pH 8.0, 150 mM KCl, 2 mM DTT. Protein samples were concentrated using Pall Microsep™ Advance centrifugal devices, and were stored at -80°C following flash-freezing in liquid nitrogen. Protein samples were analysed by SDS-PAGE with Coomassie staining, and concentrations were determined by UV spectroscopy using a Cary 60 UV spectrophotometer (Agilent) with extinction coefficients and molecular weights calculated by ProtParam (http://web.expasy.org/protparam/).
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2

Purification of TEX12 Protein Variants

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Sequences corresponding to human TEX12 core (amino-acids 49–123) wild-type, F102A F109E V116A (FFV), L110E F114E I117E L121E (LFIL) and ΔCtip (amino-acids 49–113) were cloned into pMAT11 vectors33 (link) for expression as TEV-cleavable N-terminal His-MBP- fusion proteins. Constructs were expressed in BL21 (DE3) cells (Novagen®) in 2xYT media, induced with 0.5 mM IPTG for 16 h at 25 °C. Cells were lysed by sonication in 20 mM Tris pH 8.0, 500 mM KCl, and fusion proteins were purified from clarified lysate through consecutive Ni-NTA (Qiagen), amylose (NEB) and HiTrap Q HP (GE Healthcare) ion exchange chromatography. Affinity tags were removed by incubation with TEV protease and cleaved samples were purified by HiTrap Q HP ion exchange chromatography and size-exclusion chromatography (HiLoad™ 16/600 Superdex 200, GE Healthcare) in 20 mM Tris pH 8.0, 150 mM KCl, 2 mM DTT. Protein samples were concentrated using Pall 3 kDa Microsep™ Advance centrifugal devices and were stored at −80 °C following flash-freezing in liquid nitrogen. Protein samples were analysed by SDS-PAGE with Coomassie staining, and concentrations were determined by UV spectroscopy using a Cary 60 UV spectrophotometer (Agilent) with extinction coefficients and molecular weights calculated by ProtParam (http://web.expasy.org/protparam/).
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3

Purification of SYCE2 and TEX12 Proteins

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Sequences corresponding to regions of human SYCE2 (full-length, 1-218; core, 57-165; ΔS2C, 57-154) and TEX12 (full-length, 1-123; ΔCtip, 1-113; core, 49-123; core ΔCtip, 49-113) were cloned into pRSF-Duet1 (Novagen®) expression vectors for expression as TEV-cleavable N-terminal MBP- and His6-fusion proteins, respectively. Constructs were co-expressed in BL21 (DE3) cells (Novagen®), in 2xYT media, induced with 0.5 mM IPTG for 16 hours at 25°C. Cells were lysed by sonication in 20 mM Tris pH 8.0, 500 mM KCl, and fusion proteins were purified from clarified lysate through consecutive Ni-NTA (Qiagen), amylose (NEB) and HiTrap Q HP (GE Healthcare) ion exchange chromatography. Affinity tags were removed by incubation with TEV protease and cleaved samples were purified by HiTrap Q HP ion exchange chromatography and size exclusion chromatography (HiLoad™ 16/600 Superdex 200, GE Healthcare) in 20 mM Tris pH 8.0, 150 mM KCl, 2 mM DTT. Protein samples were concentrated using Pall Microsep™ Advance centrifugal devices, and were stored at -80°C following flash-freezing in liquid nitrogen. Protein samples were analysed by SDS-PAGE with Coomassie staining, and concentrations were determined by UV spectroscopy using a Cary 60 UV spectrophotometer (Agilent) with extinction coefficients and molecular weights calculated by ProtParam (http://web.expasy.org/protparam/).
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4

Purification of Telomeric Repeat-Binding Factor 1

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TRF1 (1–439) was expressed as described above, and cell lysis was performed in 20 mM Tris pH 8.0, 500 mM KCl, 10% glycerol. Ni-NTA (Qiagen) affinity and HiTrap Q HP (GE Healthcare) ion exchange chromatography were performed using the same buffer, the latter with a salt gradient between 0.1–1.0 M KCl. TEV protease was added at a 1:15 ratio and incubated overnight at room temperature. Cleaved TRF1 was further purified through HiTrap Q HP ion exchange chromatography (salt gradient 0.1–1.0 M KCl) and size exclusion chromatography (HiLoad™ 16/600 Superdex 200, GE Healthcare) in 20 mM Tris pH 8.0, 250 mM KCl, 10% glycerol buffer, 2 mM DTT. TRF1 was concentrated to a final concentration of 15 mg ml−1 using Microsep™ Advance Centrifugal Devices 10,000 MWCO centrifugal filter units (PALL) at room temperature and stored at −80 °C following flash-freezing in liquid nitrogen.
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5

Purification of Alginate Epimerases AcAlgE2 and AcAlgE3

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For preparation of AcAlgE2 and AcAlgE3 extracts, the cells were sonicated in 50 mL MC buffer [20 mM 3-(N-Morpholino)-propanesulfonic acid (MOPS), pH 6.9, 1 mM CaCl2] and centrifuged at 27,000 × g for 30 min. The supernatant was filtered through a membrane with a pore size of 0.22 μm and applied on a 5 mL anion exchange chromatography column (HiTrap Q HP, GE Healthcare). The enzymes were purified in Fast Protein Liquid Chromatography system (ÄKTA FPLC system, GE Healthcare) by using a continuous NaCl gradient (0 to 1 M) of 50 mM MOPS, pH 6.9, 1 mM CaCl2. Fractions were analyzed for epimerase and lyase activity, and the enzyme-containing fractions collected at approximately 0.6 M NaCl were used for further analysis. The total protein content was determined with NanoDrop One Microvolume UV–Vis Spectrophotometer (Thermo Scientific, DE, USA) and SDS-PAGE. AcAlgE1 was prepared as above, but 5 mM CaCl2 was used in all buffers, and the enzyme was further purified and concentrated using a 1 ml anion exchange chromatography column (HiTrap Q HP, GE Healthcare).
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6

Peptide-MHC Class I Monomer Preparation

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Peptide–MHC class I monomers refolded with an ultraviolet light (UV)-cleavable conditional ligand were prepared in-house as previously described (7 (link)). Briefly, recombinant H-2Kb heavy chain and human β2 microglobulin light chain were produced in Escherichia coli as inclusion bodies and refolded in the presence of a UV-cleavable peptide (SIINFE-J-L, where J represents 3-amino-3-(2-nitro) phenyl-propionic acid (Peptide 2.0). Monomers were captured by anion exchange (HiTrap Q HP, GE), biotinylated, and purified by gel filtration FPLC. UV-induced ligand exchange with mutant Lama4 (mLama4) peptide was performed as described previously (7 (link)). OVA-I (SIINFEKL)-H-2Kb-PE and mutant Lama4-H-2Kb-PE tetramers were additionally obtained from the Baylor College of Medicine MHC Tetramer Production Facility.
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7

Recombinant Baculovirus Protein Purification

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Recombinant baculoviruses encoding POLγB and the different POLγA versions were expressed in Sf9 cells32 (link). These recombinant proteins all lacked the N-terminal mitochondrial targeting sequence and carried a carboxy-terminal 6 × His-tag. The proteins were purified over HIS-Select Nickel Affinity Gel (Sigma-Aldrich) and HiTrap Heparin HP (GE Healthcare), followed by HiTrap SP HP or HiTrap Q HP columns (GE Healthcare), depending on the net electrical charge of the protein. MtSSB lacking the N-terminal mitochondrial targeting sequence was expressed in insect cells and purified over DEAE Sepharose Fast Flow (GE Healthcare), HiTrap Heparin HP and HiTrap SP HP, followed by gel filtration using HiLoad Superdex 200 (GE Healthcare).
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8

Mad2 Protein Characterization Protocol

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For in vitro characterization of wild-type Mad2 or Mad2H191A (both of which contained the R133A mutation to reduce homodimerization), protein was expressed in E. coli Rosetta2 (DE3) pLysS by induction with IPTG for 20 h at 20 °C, then purified by Ni2+ affinity (Ni-NTA; Qiagen) and ion-exchange (HiTrap Q HP; GE Life Sciences) chromatography. His6-SUMO tags were cleaved by incubation with S. cerevisiae Ulp1 at 4 °C overnight, and cleaved protein was passed over a Ni2+ affinity column a second time to remove uncleaved protein, His6-SUMO tags, and Ulp1. Protein was purified by size-exclusion chromatography (Superdex 200, GE Life Sciences), concentrated by ultrafiltration, and stored at −80 °C for biochemical assays.
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9

MHC Class I Multimer Preparation

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For determining kinetics of mLama4- or mAlg8-specific T cell infiltration into tumours, H-2Kb tetramers conjugated to PE were prepared with mutant Lama4 or Alg8 peptides and produced by the NIH Tetramer Core Facility (Emory University). For screening H-2Kb or H-2Db predicted epitopes, we generated peptide-MHC Class I complexes in house. The peptide-MHC class I complexes refolded with a UV-cleavable conditional ligand were prepared as described with modifications37 (link). Briefly, recombinant H-2Kb and H-2Db heavy chains and human β2 microglobulin light chain were produced in Escherichia coli, isolated as inclusion bodies, and dissolved in 4M urea, 20 mM Tris pH 8.0. MHC Class I refolding reactions were performed by dialyzing a molar ratio of heavy chain: light chain: peptide of 1:1:8 against 10 mM potassium phosphate, pH 7.4 for 48 h. The UV-cleavable peptide SIINFEJL used to refold H-2Kb was purchased from Peptide 2.0. Refolded peptide-MHC class I complexes were captured by ion exchange (HiTrap Q HP, GE), biotinylated, and purified by gel filtration FPLC. UV-induced ligand exchange and combinatorial encoding of MHC Class I multimers was performed as described38 (link), except that the peptide-MHC multimers used for flow cytometry staining were prepared by the addition of titrated amounts of streptavidin-fluorochrome in a 10 μL format39 (link).
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10

Purification of SARS-CoV-2 Nsp1 and eIF3j

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Full-length SARS-CoV-2 Nsp1 was cloned into pMAT-9 s vector and pET-Duet vector for expression of MBP-tagged and 6 × his tagged proteins, respectively. The Escherichia coli BL21 (DE3) cells were used for protein expressions, which were induced by 0.5 mM isopropyl β-D-1-thiogalactopyranoside (IPTG) at 16°C for 16 hours in Terrific Broth. Cells were harvested and lysed using a microfluidizer. The lysate was clarified by centrifugation and then applied to a Ni-NTA (QIAGEN) column. Anion exchange (HiTrap Q HP, GE healthcare) chromatography was performed in a buffer of 50 mM Tris, pH 8.0 with a NaCl concentration gradient from 50 mM to 1M. Subsequent size exclusion chromatography (HiLoad Superdex 75, GE healthcare) was performed in a buffer of 50 mM Tris, 150 mM NaCl, pH 8.0. Purity of the proteins was analyzed by SDS-PAGE after each step. Full length eIF3j was expressed in Escherichia coli BL21 and purified with a similar method.
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