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85 protocols using dr6000

1

Dissolved Organic Matter Analysis Protocol

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The dissolved organic matters were measured as dissolved organic carbon (DOC) using the non-purgeable organic carbon analysis by a TOC analyzer (TOC-L, Shimadzu, Japan).
Samples were subjected to EEM measurement without dilution. The fluorescence spectroscopy was obtained by a fluorescence spectrophotometer (F-7000, Hitachi, Japan). For all measurements, excitation wavelengths start from 220 to 500 nm on 5 nm step and emission wavelengths are from 230 to 650 nm on 5 nm step. Excitation and emission slits were set to 5 nm and the photomultiplier tube (PMT) voltages used were 700 V. To correct inner filter effects, the absorbance of samples was recorded from 220 to 650 nm with 0.5 nm step in a 1 cm quartz cuvette (DR6000, Hach, USA). The samples' fluorescence data was subjected to inner filter correction. And then Raman normalization was performed using Raman scatter peak obtained from a Milli-Q water sample as reference. Finally, the Raman signal was removed by subtracting blank sample (Milli-Q water) EEM. These procedures transformed fluorescence intensity into Raman units (R.U.). The drEEM toolbox was employed to perform these procedures for EEM data.12 (link)UV254 was determined by a UV-visible spectrophotometer (DR6000, Hach, USA) with a 1 cm quartz cuvette. NO2, NH4+, NO2 were analyzed according to Standard Method.13
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2

Nickel Content Analysis of Sands

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Nickel content was examined for the quarry sand, the washed quarry sand, and the sea sand. Ten grams of sand with 20 mL deionized water in a 50 mL reaction tube were autoclaved and subsequently shaken at 80 rpm in a rotary shaker (IKA Trayster digital, IKA‐Werke GmbH & CO. KG) for 6 h. Afterward, nickel content was analyzed using a nickel trace cuvette test (LCK 537, Hach Company) with a range from 0.05 to 1.0 mg L−1 nickel. Measurements were conducted in an ultraviolet–visual photometer DR6000 (Hach Company).
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3

Synthesis and Characterization of SNAT-Docetaxel Conjugate

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SNAT (Tx–[NH2-AgNPs]; US Patent No. 63/042,070) was synthesized in-house using the “seed” of our patented NH2-AgNPs (US Patent No. PCT/US2021/014343). The synthesis followed one-pot design using UV254 nm irradiation for 6 h followed by heating at 95 °C for 45 min, then KBH4 reduction, and cooling at room temperature overnight, followed by Docetaxel addition and warming at 60 °C with gentle stirring for 12 h. SNAT thus synthesized was purified using 3.5 kD dialysis membranes (Spectra/Por 3.5kD dialysis kit). Purified SNAT was characterized in detail using multiple complementary techniques: electron microscopy (TEM, Philips EM 420), energy dispersive spectroscopy (EDS), dynamic light scattering (DLS; Malvern Zetasizer Nano ZS90), UV–Vis spectrophotometer (Hach DR6000), and other physicochemical analyses (pH, electrical conductance).
Potential stability of SNAT and seed NH2-AgNPs were also measured as a function of time (0–3 years), incubating at room temperature (25 °C), using DLS and UV–Vis spectrophotometer.
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4

Activated Carbon from Oil Palm Trunk

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All chemical reagents were of analytical grade and used without further purification. Oil palm trunk chips were purchased from a local factory. Phosphoric acid (H3PO4, 80%) and MB were purchased from Sigma-Aldrich, (Petaling Jaya, Malaysia).
The surface morphology of oil palm trunk activated carbon (OPTAC) was characterized using a scanning electron microscope (model JSM-5910, JEOL USA, Peabody, MA, USA). A Nicolet iS20 spectrophotometer was used for the identification of chemical functional groups present in OPTAC through FTIR-ATR analysis. Meanwhile, a Bruker D2 Phase X-ray diffractometer with Cu-Kα (λ = 0.154060 Å) radiation source operating at 40 kV and 25 mA was utilized for studying the diffraction patterns of OPTAC. A UV-vis spectrophotometer (HACH DR6000) was used for the determination of MB removal percentage.
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5

Evaluating RDX Treatment Efficiency

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Biochemical Oxygen Demand (BOD) analyses were performed on samples collected from effluent of the column tests for treatment of the lab-prepared RDX solution as well as untreated RDX solution. A standard 5-day BOD test was performed according to the standard procedure 5210B (Standard Methods for the Examination of Water and Wastewater, 22nd Ed). The seeded dilution water used in the procedure was prepared with POLYSEED capsule purchased from InterLab® (Texas, USA). COD of the samples before and after treatment, was quantified with dedicated kits for COD analysis (HACH, Loveland, CO) (D.L. COD=1.0 mg L -1 ) using a UV-Vis spectrophotometer (DR 6000, HACH, Loveland, CO).
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6

Nitrogen species quantification protocol

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Nitrite (NO2 -), nitrate (NO3 -), ammonium (NH4 + ) and total nitrogen (TN) concentrations were quantified with dedicated kits for nitrogen compounds analysis (HACH Company, Loveland, CO) (D.L. TN=5.0 mg L -1 ; NO2 -=0.005 mg L -1 ; NO3 -=0.006; NH4 + = 0.1 mg L -1 ) using a UV-Vis spectrophotometer (DR 6000, HACH Company, Loveland, CO). The total nitrogen concentrations obtained analytically are indicated as "analytical total nitrogen" while the "calculated total nitrogen" refers to the sum of nitrogen from all identified species in solution.
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7

Comprehensive Wastewater Analysis Protocol

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The chemical oxygen demand (COD), total nitrogen (TN) and total phosphorus (TP) in the wastewater and effluent were analyzed once every 24 h using a spectrophotometer (Hach DR 6000, Düsseldorf, Germany). The content of total solids (TS) was determined gravimetrically. The pH was measured with a pH meter (1000 L, VWR International, Radnor, PA, USA). Biogas flow rate was measured continuously using a digital gas flow meter (Aalborg Instruments & Controls, Inc., Orangeburg, NY, USA). Biogas composition was analyzed once every 7 days using a GMF 430 m (GasData, UK) and a gas chromatograph (GC, 7890A Agilent, Santa Clara, CA, USA) equipped with a thermal conductivity detector (TCD). The GC was fitted with two Hayesep Q columns (80/100 mesh), two molecular sieve columns (60/80 mesh) and a Porapak Q column (80/100) operating at a temperature of 70 °C. The temperature at the injection and detector ports was 150 °C and 250 °C, respectively. Helium and argon were used as the carrier gases at a flow rate of 15 mL/min. Samples for molecular profiling of the bacterial community were extracted from filling elements at the end of each variant. The molecular analysis was performed to determine the percentage of ammonia-oxidizing bacteria (AOB) in the biofilm using the fluorescent in situ hybridization (FISH) technique [20 (link)].
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8

Physicochemical Characterization of Raw Clay Soil

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The raw clay soil was characterized for pH (ISO 10390: 2014), electrical conductivity (ISO 11265: 2014), organic matter (Walkely-Black), total nitrogen (Kjeldahl), cation exchange capacity (ammonium acetate), and calcium carbonate (acid neutralization). UV-Vis absorption studies were conducted using a spectrophotometer (DR 6000, HACH, USA) at 200–900 nm wavelength with a 1 nm scanning step. The crystalline structure was examined using X-ray diffraction (Bruker D8, Bremen, Germany) with a Cu Kα source (λ = 1.5406 Å) from 10° to 70° (2θ) at a scanning rate of 2° min−1. The functional groups were studied by FTIR spectroscopy (Spectrum 65, PerkinElmer, USA) in the range of 400–4000 cm−1 with a resolution of 4 cm−1 using KBr pellets. The samples were analyzed in the powder form (ATR) technique. The pH value was measured by a multi pH meter with a resolution capacity of pH 0.001–0.1 (HQ440D, HACH, USA). The adsorbent surface morphology was examined using Scanning Electron Microscopy (SEM) operating at 15 kV (JCM-6000Plus, JEOL Ltd., Japan). The SEM images were analyzed using ImageJ software (v1.53k).
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9

Comprehensive Water and Sediment Analysis

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T, DO, pH, ORP, and EC of the water samples were determined using Hydrolab DS5 (Hach Company, USA). According to the standard methods, TN, NO3-N, NO2-N, and NH4+-N were measured using DR6000 (Hach Company, USA) [22 ]. The different forms of transferable nitrogen for sediment were evaluated using the sequential extraction method (Figure 1b) and more information is shown in the Supplementary Material [23 ,24 (link)].
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10

Enzyme Activity Determination by Spectrophotometry

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The activity was determined for both free and immobilized enzymes by a spectrophotometric method: 5 mg of zeolite/β-glucosidase or 100 µL of the diluted pure enzyme were incubated in 0.1 M acetate buffer (pH 5; 2 mL final volume), and 800 µL of 5 mM p-nitrophenyl-β-D-glucopyranoside (p-NPG) for 10 min at 50 °C. The reaction was stopped with 3 mL of sodium hydroxide (NaOH), and the immobilized enzyme was centrifugated at 3175× g at 4 °C for 10 min, after which aliquots of the supernatants were taken, and their absorbance at 385 nm was measured in a spectrophotometer (DR 6000 of HACH, Loveland, CO, USA). The concentration of the purified protein was determined by the Bradford method using bovine serum albumin as a standard [24 (link)].
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