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42 protocols using rantes

1

Internalization Assay for CCR5 Receptor

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The internalization assay was performed accordingly with our experimental conditions previously published [10 (link),12 (link)]. Briefly, R5-SupT1-L23 or M10 cells were exposed to CCR5 Ab Pos (1/30), and to 2 μg/mL RANTES (R&D Systems, MN, USA) as a positive control, at 37 °C for 30 min. The cells were then washed and incubated for an additional 120 min [10 (link),12 (link)]. CCR5 Ab Neg was used as a negative control [10 (link),12 (link)]. When indicated, the cells were pre-treated for 1 h with staurosporine (a pan-kinases inhibitor) (50 nM) (Sigma Aldrich, St. Louis, MO, USA). As staurosporine has been reconstituted in DMSO, the same percentage of DMSO diluted in RPMI was used as a negative control (unpublished data). The detection of cytoplasmic CCR5 was obtained by using immunofluorescence and analyzed on a Leica DMRE fluorescence microscope, according to Venuti et al., 2016 [10 (link)].
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2

Molecular Mechanisms Underlying Cellular Pathways

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3-Methyladenine (3-MA) was purchased from Selleckchem (Houston, TX). Antibodies to p-Smad3, Smad3, p-extracellular signal–regulated kinases 1/2 (ERK1/2), ERK1/2, p-EGFR, Beclin-1, Notch1, p-TAK1, TAK1 were purchased from Cell Signaling Technology (Danvers, MA). Antibodies to Collagen I (A2), GAPDH, EGFR, TGFβRI, p-NF-κB (p65), NF-κB (p65), TNF-α, Jagged-1, CD68 and CD3 were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Anti-p-Histone H3 antibody was purchased from Abcam (Cambridge, MA). MCP-1, RANTES, TGF-β1 ELISA kits and antibody to lipocalin-2 (Lcn2) were purchased from R&D systems (Minneapolis, MN). Anti-LC3 antibody was purchased from Novus Biologicals (Littleton, CO). Anti-β-Catenin antibody was purchased from BD Biosciences (San Diego, CA). Anti-Wnt1 antibody was purchased from Rockland (Limerick, PA, U.S.A.). Vectastain ABC kit was from Vector Laboratories (Burlingame, CA). Malondialdehyde (MDA) and superoxide dismutase (SOD) biochemical reagent kits were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Antibodies to α-smooth muscle actin (α-SMA ) and β-actin, secondary antibodies for Western blot, and all other chemicals were purchased from Sigma (St. Louis, MO).
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3

Cytokine and Signaling Pathway Analysis Protocol

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Recombinant human IL-1β, IL-6, IL-8, RANTES, and MMP-1 ELISA assays were purchased from R&D Systems (Minneapolis, MN). PGG was purchased from Sigma (G7548 >95% pure) for in vitro and from Cayman Chemicals (#16007) for animal study. Thiamet G (#13237, Cayman Chemicals), human cytokine antibody array C5 (AAH-CYT-5-2) and TRANCE ELISA (ELM-TRANCE-1) from RayBiotech (Norcross, GA), rat Cytokine/Chemokine Magnetic Bead Panel (RECYMAG65K27PMX; Sigma, MO), mouse O-GlcNAc (CTD110.6) (sc-59623), mouse A20 (#sc-166692), and mouse monoclonal β-actin (sc-47778) antibodies were purchased from Santa Cruz Biotech (Santa Cruz, CA). Antibodies against p-TAK1 Thr184/187 (#4531), p-JNK (#9251) p-JNK (#4511), p-c-Jun (Ser73) (#9164), MyD88 (D80F5) (#4283), CYLD (D6O5O) (#12797) were purchased from Cell Signaling Technology (Beverly, MA). Anti-TAK1 (ab109526) and anti-TRAF6 (ab33915) antibodies were from Abcam (Cambridge, MA). Goat anti-rabbit and goat anti-mouse HRP-linked secondary antibodies were purchased from Cell Signaling Technology.
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4

Cytokine Quantification in Cell Culture

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Culture supernatants were collected at the end of experimental conditions, 16 h post-agonist exposure, and stored at −80°C until used in the assays. The concentrations of supernatant IL-6 (eBioScience, San Diego, CA, USA), RANTES and IP-10 (R&D Systems, Minneapolis, MN, USA) were assessed using a commercially available ELISA kit and performed according to the manufacturer’s specifications.
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5

Measuring Inflammatory and Anti-Inflammatory Cytokines

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Extra blood left after the above tests was used to detect several inflammatory or anti-inflammatory cytokines before intervention, 6 months after intervention initiation, and 3 months after stopping the intervention. After centrifugation, the serum was refrigerated at −80°C until use for ELISA. The inflammatory cytokines used for ELISA test were as follows: TNF-α (Thermo Scientific, Carlsbad, CA, USA), IL-8 (Thermo Scientific, Carlsbad, CA, USA), IL-17 (R&D Systems, Minneapolis, Minnesota, USA), MIP-1β (PeproTech, Cranbury, NJ, USA), and RANTES (R&D Systems, Minneapolis, Minnesota, USA). The anti-inflammatory cytokine used was TGF-β1 (Thermo Scientific, Carlsbad, CA, USA). All samples were measured by the commercial protocol at least in triplicate.
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6

Cytokine Quantification in Cell Culture

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Cell culture supernatants or sera were analyzed by ELISA for IL-1β, TNF, IL-6, IL-12p40, IL-10 (eBiosciences) and Rantes (R&D systems). A sandwich ELISA for mouse IFN-β was performed as described 46 (link). Cytokines from cell culture supernatants were quantitated using the Bio-Rad Bio-PlexTM Mouse Cytokine Assay kit. Transcript abundance of cytokines were determined by quantitative PCR using primers listed in supplementary table S1.
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7

Chemotaxis Assay for CD8+ T Cell Migration

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The Millipore 3 μm QCM Chemotaxis Assay 24-well-was used to measure leukocyte migration toward conditioned media. One million splenic CD8+ cells from tumor-bearing mice (MACS sorted) were added in culture media to the invading cell chamber in each well and 500–600 μL conditioned media to the non-invading chamber. 1ug/ml of Anti-CCL5, [RANTES; R&D Systems, AF478], or Anti-CXCL9 [MIG; BioLegend, 515604] or Anti-CXCL10 [IP-10; BioLegend, 604454] was added to selected wells of conditioned media. Four hours later, the insert taken out from the chamber and infiltrating CD8+ cells were counted using trypan blue in a hemocytometer. The results were tabulated as bar graphs.
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8

Cytokine Profiling in Inflammatory Responses

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Supernatants were collected at different time points after stimulation with TNF-α or infection with influenza A virus. The levels of HMGB1, IL-6, granulocyte colony-stimulating factor (G-CSF), granulocyte–macrophage CSF (GM-CSF), regulated on activation, normal T cell expressed and secreted (RANTES), and interferon-γ inducible protein (IP-10) were measured using commercial ELISA kits (HMGB1: Shino-test, Kanagawa, Japan; IL-6, G-CSF, GM-CSF, RANTES, IP-10: R&D Systems, Minneapolis, MN, USA) according to the manufacturer’s instructions.
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9

Boyden Chamber Migration Assay

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In the Boyden chamber (BD Biosciences) migration assay, resting PBL or HUVECs (5 × 104 or 2 × 103, resp.) were plated onto the apical side of 50 μg/mL matrigel-coated filters (8.2 mm diameter and 0.3 μm or 0.5 μm pore size; Neuro Probe, Inc.; BIOMAP snc, Milan, Italy) in RPMI or M200 serum-free medium, with or without OPN-FL (10 μg/mL), OPN-N (5 μg/mL), or OPN-C (5 μg/mL). Mediums containing 1 ng/mL RANTES (R&D System) or 10 ng/mL vascular endothelial growth factor (VEGF-α, R&D System) were placed in the basolateral chamber as a positive chemoattractant stimuli for PBL and HUVECs, respectively. The chamber was incubated at 37°C under 5% CO2. After 20 h, the cells on the apical side were wiped off with Q-tips. The cells on the bottom of the filter were stained with crystal violet, and all were counted (fourfold filter) with an inverted microscope (magnification 40x). Data are shown as percentages of the treated cells migration versus the control migration measured for untreated cells. Control migration is (mean ± SEM) 263 ± 45 cells for HUVECs (n = 5) and 155 ± 25 for lymphocytes (n = 5).
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10

Cytokine Profiling in Brain Tissue and Cell Cultures

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Brain tissue in the cerebral cortex around the injured area was collected and homogenized. The homogenates were centrifuged at 4°C at 12,000 × g for 15 minutes, and supernatants were collected carefully and evaluated in duplicate using IL-1β, IL-6, TNF-α, MCP (monocyte chemoattractant protein)-1 and RANTES (regulated upon activation, normal T cell expressed and secreted) assay kits (R&D Systems, Minneapolis, MN, US), in accordance with the manufacturer’s guidelines. Tissue cytokine concentrations are expressed as picograms per milligram of protein.
Cell culture supernatants were carefully collected at 24 hours after stimulation with LPS and centrifuged at 4°C at 12,000 × g for 15 minutes. Cytokine concentrations were evaluated using protein assay kits (R&D Systems, Minneapolis, MN, US), in accordance with the manufacturer’s guidelines. Cell cytokine concentrations are expressed as picograms per milliliter.
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