Tri 3d bon

Manufactured by Ratoc System Engineering

Sourced in Japan

The TRI/3D-BON is a laboratory equipment product developed by Ratoc System Engineering. It is designed for specific technical functions without further interpretation on its intended use.

Automatically generated - may contain errors

Lab products found in correlation

R mct2, by Rigaku (13 mentions) Smx 90ct, by Shimadzu (7 mentions) Smx 100ct, by Shimadzu (4 mentions) Inspexio smx 100ct, by Shimadzu (4 mentions) Inspexio smx 90ct, by Shimadzu (4 mentions) R mct, by Rigaku (4 mentions) Smx 130ct microcomputed tomography micro ct scanner, by Shimadzu (3 mentions) Micro ct scanner, by Scanco (2 mentions) Smx 130ct, by Shimadzu (2 mentions) Toscaner 32300μfd, by Toshiba (2 mentions) A5268, by Merck Group (2 mentions) Microfocus x ray ct system smx 90ct, by Shimadzu (2 mentions) A5533, by Merck Group (2 mentions) R mct2 3d micro x ray ct system, by Rigaku (2 mentions) R mct2 system, by Rigaku (2 mentions) Efficient navigation zen , by Zeiss (2 mentions) Lsm 700, by Zeiss (2 mentions) Micro ct, by Hitachi Medical (2 mentions) Tdm1000, by Yamato Scientific (1 mentions) Ct lab hx, by Rigaku (1 mentions)

122 protocols using tri 3d bon

In Vivo Micro-CT Analysis of Postoperative Soft Tissue Swelling

Check if the same lab product or an alternative is used in the 5 most similar protocols

In vivo micro-CT was performed immediately after surgery, on postoperative day 2, and every week after surgery until euthanasia (6 weeks). The treated caudal vertebrae were scanned using micro-CT (R_mCT; Rigaku Mechatronics, Tokyo, Japan) at a resolution of 59 μm/voxel in vivo, and the data were collected at 90 kV and 160 μA. Visualization and data reconstruction were conducted using TRI/3D-BON (Ratoc System Engineering, Tokyo, Japan).
To quantify the soft tissue swelling at the surgical sites, the TV was calculated by setting a ROI on micro-CT images as follows: a rectangle including the skin surfaces in the axial width and 5 mm in the longitudinal length that centers the intervertebral disc space (threshold [L = 15500], software; TRI/3D-BON, Ratoc System Engineering, Tokyo, Japan) (Fig. 4a). The ratio of soft tissue swelling was calculated by dividing the TV of the surgical site on postoperative day 2 by the TV, 1 day before surgery.

Nakagawa S., Okada R., Kushioka J., Kodama J., Tsukazaki H., Bal Z., Tateiwa D., Ukon Y., Hirai H., Makino T., Takenaka S., Okada S, & Kaito T. (2022). Effects of rhBMP-2-loaded hydroxyapatite granules/beta-tricalcium phosphate hydrogel (HA/β-TCP/hydrogel) composite on a rat model of caudal intervertebral fusion. Scientific Reports, 12, 7906.

+ Open protocol

+ Expand

Quantitative Analysis of Rat Talus Microarchitecture

Check if the same lab product or an alternative is used in the 5 most similar protocols

Rat left ankle joints fixed in 70% ethanol were scanned using a µ-CT system (TOSCANER-32300μFD, TOSHIBA, Tokyo, Japan). The reconstructed data sets were examined using three-dimensional data analysis software (TRI/3-D-BON, RATOC System Engineering Co., Tokyo, Japan). The volumes of interest were defined in the trabecular zone in the talus bones. To analyze the talus, the following trabecular bone parameters in the whole talus were evaluated: BV/TV, Tb.Th, and Tb.Sp. Moreover, to quantify bone loss, indirect parameters of microarchitecture were also assessed, including MSV, which is the mean volume of all the parts of an object that can be unobscured in all the directions from a point inside the object [35 (link)]. We investigated eroded bone surface per total bone surface on talus and osteophyte volume per whole talus using TRI 3D-BON software (RATOC System Engineering Co., Tokyo, Japan).

Shimomura S., Inoue H., Arai Y., Nakagawa S., Fujii Y., Kishida T., Ichimaru S., Tsuchida S., Shirai T., Ikoma K., Mazda O, & Kubo T. (2018). Treadmill Running Ameliorates Destruction of Articular Cartilage and Subchondral Bone, Not Only Synovitis, in a Rheumatoid Arthritis Rat Model. International Journal of Molecular Sciences, 19(6), 1653.

+ Open protocol

+ Expand

Quantitative Bone Microarchitecture Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols

After healing periods of 4 weeks (n = 3) and 8 weeks (n = 3), dogs were deeply anesthetized and the oral tissues were fixed by 4% (w/v) paraformaldehyde cardiovascular perfusion. Dogs were then sacrificed by isoflurane inhalation overdose. Blocks containing the defect regions along with adjacent soft and hard tissues were dissected and fixed in 10% buffered formalin for 1 week, and then blocks were scanned and analyzed using a micro–computed tomography (micro-CT) scanner (Scanco Medical AG, Brüttisellen, Zurich, Switzerland) at 80 kV and 116 μA. Slice thickness was 25 μm. Images were reconstructed using a three-dimensional structural analysis software (TRI/3D-BON; Ratoc System Engineering, Tokyo, Japan). The region of interest was placed where the original defect was located, as the borders were visually recognizable. Trabecular bone volume per tissue volume (BV/TV), trabecular number (Tb.N), trabecular thickness (Tb.Th), trabecular spacing (Tb.Sp), connectivity density (Conn-Den), and structure model index (SMI) were measured.

Wang P., Wang W., Geng T., Liu Y., Zhu S., Liu Z, & Yuan C. (2019). EphrinB2 regulates osteogenic differentiation of periodontal ligament stem cells and alveolar bone defect regeneration in beagles. Journal of Tissue Engineering, 10, 2041731419894361.

+ Open protocol

+ Expand

μCT Analysis of Tooth Replantation

Check if the same lab product or an alternative is used in the 5 most similar protocols

μCT analysis (Elescan; Nippon Steel Texeng. Co., Ltd, Tokyo, Japan) was used to examine the stages of root development and the morphological changes of the replants in the Opn KO 2W and WT 2W groups at 3, 5, 7, and 14 days following tooth replantation. The CT settings were as follows: pixel matrix, 512 × 512 × 256; slice thickness, 20.67 μm; projection number, 900 × 32; magnification, × 5.3; voltage, 63 kV; and electrical current, 101 μA. The maxillae were reconstructed using a software program (TRI/3D Bon, Ratoc System Engineering, Tokyo, Japan) to evaluate the three-dimensionally reconstructed views of the maxillae including the upper first molars (M1). The untreated teeth from the Opn KO 2W and WT 2W groups were used as the control groups.

Suzuki-Barrera K., Makishi S., Nakatomi M., Saito K., Ida-Yonemochi H, & Ohshima H. (2022). Role of osteopontin in the process of pulpal healing following tooth replantation in mice. Regenerative Therapy, 21, 460-468.

+ Open protocol

+ Expand

Quantifying Bone Microstructure Orientation

Check if the same lab product or an alternative is used in the 5 most similar protocols

3D data were analyzed using Tri/3D-BON (Ratoc System Engineering), IMARIS 6.3.1 (Bitplane) and ImageJ 1.48v software (National Institutes of Health). Bi-level images were generated based on threshold CT values to extract capillaries and osteocyte lacunae. The direction of the long axis of both segments of blood capillaries and osteocyte lacunae was estimated using the ellipsoid approximation method. The angles between a segment of capillary and the long axes of osteocyte lacunae were calculated from the inner product of two vectors.

Matsuo K., Kuroda Y., Nango N., Shimoda K., Kubota Y., Ema M., Bakiri L., Wagner E.F., Takeda Y., Yashiro W, & Momose A. (2015). Osteogenic capillaries orchestrate growth plate-independent ossification of the malleus. Development (Cambridge, England), 142(22), 3912-3920.

+ Open protocol

+ Expand

Femur Epiphysis Micro-CT Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols

Bone morphometry was performed in the region of femur epiphysis. Micro-CT images of the distal femur were obtained using 72-kV and 10-μA irradiation from a high-resolution X-ray tomographic system (ELESCAN, Nittetsu Elex, Osaka, Japan). Bone structure analysis was performed using a software tool (TRI/3D-Bon; RATOC System Engineering, Tokyo, Japan), for the reconstruction of a three-dimensional (3D) image with 222 slices, with 21 μm pitch between slices. Regions of interest (ROI) (3.5 × 3 × 3 mm) were trimmed in all samples. For the bone mineral density (BMD) analysis, density calibration curve was calculated using a standardized Phantom Parameter (RATOC System Engineering). For bone morphometry analysis, the numerical quantitative outcome values were obtained by TRI/3D-Bon software.

Ida T., Kaku M., Kitami M., Terajima M., Rosales Rocabado J.M., Akiba Y., Nagasawa M., Yamauchi M, & Uoshima K. (2018). Extracellular matrix with defective collagen cross-linking affects the differentiation of bone cells. PLoS ONE, 13(9), e0204306.

+ Open protocol

+ Expand

Evaluating Bone Formation in Calvaria

Check if the same lab product or an alternative is used in the 5 most similar protocols

To evaluate the bone-forming capacity of sponges and the quality of newly formed bone, harvested calvaria implanted with or without sponges were assessed using μCT (SMX-130CT; Shimadzu, Kyoto, Japan). Samples were scanned with a 55-kV tube voltage and a 90-μA tube current. Images were saved at a resolution of 512 × 512 pixels. Bone mineral density images of samples were vertically and laterally reconstructed using a three-dimensional (3D) image analysis system (TRI/3D-Bon; Ratoc System Engineering, Tokyo, Japan). Bone formation was estimated from BV/TV and BMC/TV, whereas the quality of newly formed bone was estimated from BMC/BV. BMC, which represented calcified bone tissue, was quantified using cylindrical phantoms containing hydroxyapatite (200–1550 mg/cm³).

Huang A., Honda Y., Li P., Tanaka T, & Baba S. (2019). Integration of Epigallocatechin Gallate in Gelatin Sponges Attenuates Matrix Metalloproteinase-Dependent Degradation and Increases Bone Formation. International Journal of Molecular Sciences, 20(23), 6042.

+ Open protocol

+ Expand

Micro-CT Analysis of Anti-Rotation Device

Check if the same lab product or an alternative is used in the 5 most similar protocols

Before and after cyclic loading, micro-computed tomography (μ-CT) images of the anti-rotation device of the external or internal joint system were acquired (HMX-225 Actis4, Tesco, Miyagi, Japan) under the following imaging conditions: tube voltage, 180 kV; tube current, 146 μA. Three-dimensional (3D) structure analysis software (TRI/3D/BON, RATOC System Engineering, Tokyo, Japan) was used to create a 3D reconstruction, and the internal structure was observed.
In addition the degree of deformation was measured at the width of the sleeve in the internal joint system. The width of the sleeve, which was defined as the distance between the corners of each sleeve on the anti-rotation device, was measured on the implant body side. The value obtained was then taken as indicating the degree of deformation of the anti-rotation device (Fig. 5).

Sakamoto K., Homma S., Takanashi T., Takemoto S., Furuya Y., Yoshinari M, & Yajima Y. (2016). Influence of eccentric cyclic loading on implant components: Comparison between external joint system and internal joint system. Dental materials journal, 35(6).

+ Open protocol

+ Expand

Quantifying Tibia Ossification in Embryos

Check if the same lab product or an alternative is used in the 5 most similar protocols

After fixing, tibia samples were collected from D17 embryos and scanning images were acquired using a 3-D X-ray microscopic CT scanner (TDM-1000, Yamato Scientific Co., Tokyo, Japan) at 60 kV and 70 µA, using a tungsten target. After the segmentation threshold (109 mg/cm³) was set to remove the soft tissue from the total tissue, the degree of ossification was quantified using the micro-CT analysis software TRI/3D-BON (Ratoc System Engineering Co., Tokyo, Japan).
Bone volume (BV, mm³), total tissue volume (TV, mm³), bone surface (BS, mm²), bone volume per total tissue volume (BV/TV, %), bone surface per bone volume (BS/BV, 1/mm), and volumetric bone mineral density (vBMD, mg/cm³) were determined by manual calculation.

Obara K., Obara (Henmi) C., Naito M., Mitsui I., Une Y., Asano A, & Tajima A. (2022). Effects of Calcium Lactate on the Development of Chicken Embryos in a Shell-less Culture System up to Day Seventeen of Incubation. The Journal of Poultry Science, 59(2), 168-174.

+ Open protocol

+ Expand

Quantification of Bone Regeneration by μ-CT

Check if the same lab product or an alternative is used in the 5 most similar protocols

At 4 weeks after surgery, the femur with bone defect was harvested, and the external fixator and pins were removed from the bone. For quantification of bone regeneration, μ-CT imaging analysis was performed. The femurs were scanned and evaluated using a μ-CT scanner (R_mCT2, RIGAKU, Tokyo, Japan). The region of interest (ROI) was set as 3 mm proximal and distal from the midline of the defect site on sagittal view. Tissue mineral density (TMD), total callus volume (TV), bone mineral content (BMC), and volumetric bone mineral density (vBMD; BMC/TV) of the callus were evaluated by TRI/3-D-BON (Ratoc System Engineering, Tokyo, Japan).

Kuroiwa Y., Fukui T., Takahara S., Lee S.Y., Oe K., Arakura M., Kumabe Y., Oda T., Matsumoto T., Matsushita T., Akisue T., Sakai Y., Kuroda R, & Niikura T. (2019). Topical cutaneous application of CO2 accelerates bone healing in a rat femoral defect model. BMC Musculoskeletal Disorders, 20, 237.

+ Open protocol

+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Revolutionizing how scientists
search and build protocols!