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41 protocols using na2hpo4

1

Synthesis of Copper-Based Electrodes

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Na2HPO4 (≥99.0 %) and NaClO solution (17 %) were purchased from VWR. Maleic acid (≥99.0 %) was obtained from Riedel-de Haën. All other chemicals and Cu foil (99.98 %) were from Sigma-Aldrich. All chemicals were used without further purification. Carbon cloth was provided by PHYCHEMI.
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2

Semisolid Agar Plate Preparation

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The preparation of semisolid “swimming” agar plates was carried out according to Tremblay et al. [41] (link). M9-medium, consisting of the following salts Na2HPO4, KH2PO4, NaCl and NH4Cl (all purchased from VWR Germany) diluted in aqua dest., and the supplements MgSO4, CaCl2 and glucose-monohydrat were pipetted to 0.3% Bacto agar (BM, Becton) dissolved in aqua dest. The solution was then filled into petri dishes and dried under laminar flow. The semisolid agar plates were used on the same day as preparation. For the motility-tests overnight cultures of the different strains were diluted in fresh LB broth and incubated for additional 2 h at 37°C. 10 µl of this bacterial suspension was inoculated in the middle of a semisolid agar plate and incubated at 37°C for 48 h. Experiments were repeated three times and the reported values represent the average. Error bars reflect the standard deviations.
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3

NMR Sample Preparation for Synovial Fluid

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150 μL
of each thawed SF sample was diluted to a final volume containing
50% (v/v) SF, 40% (v/v) dd 1H2O (18.2 MΩ),
100 mM PO43– pH 7.4 buffer (Na2HPO4, VWR International Ltd., Radnor, Pennsylvania, USA
and NaH2PO4, Sigma-Aldrich, Gillingham, UK)
in deuterium oxide (2H2O, Sigma-Aldrich) and
0.0025% (v/v) sodium azide (NaN3, Sigma-Aldrich). Samples
were vortexed for 1 min, centrifuged at 13 000g and 4 °C for 2 min and 200 μL transferred (taking care
not to disturb any pelleted material) into 3 mm outer diameter NMR
tubes using a glass pipet.
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4

NMR Sample Preparation for Synovial Fluid

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100 μL of SF was thawed
out over ice and diluted to a final volume containing 50% (v/v) SF,
40% (v/v) ddH2O (18.2 MΩ), 10% (v/v) 1 M PO43– pH7.4 buffer (Na2HPO4,
VWR, Pennsylvania, US; NaH2PO4, Sigma-Aldrich,
Gillingham, UK) in deuterium oxide (2H2O) and
0.0025% (v/v) sodium azide (NaN3, Sigma-Aldrich, Gillingham,
UK). Samples were vortexed for 1 min, centrifuged at 13 000g and 4 °C for 2 min and 190 μL transferred into
3 mm outer diameter NMR tubes using a glass pipet.
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5

Quantitative GCase Activity Assay

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CSF samples were thawed on ice, centrifuged briefly at 1000×g and diluted 1:2 in assay buffer (0.1 M citric acid (#84841.290, VWR Chemical, USA) and 0.2 M Na2HPO4 (#28026.260, VWR Chemicals, USA), pH 5, supplemented with 2 mg/ml taurodeoxycholic acid (TDC, #336840010, Acros organics, Belgium)) prior to the assay. The GCase substrate, 4-methylumbelliferyl β-d-glucopyranoside (#J66630.MD, Sigma Aldrich, USA), was dissolved at a concentration of 0.5 mM in assay buffer. 4-methylumbelliferyl (4-MU, #A10337, Alfa Aesar, USA) served as a calibrator.
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6

Carbonated Calcium Phosphate Nanoparticle Synthesis

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The suspension of caCP was prepared by wet chemical precipitation by dissolving calcium acetate (Ca(C2H3O2)2, Acros Organics BV, Geel, Belgium 99%) and disodium hydrogen phosphate (Na2HPO4, VWR International Ltd., Radnor, PA, USA, AnalaR). The Ca/P ratio was 5:3. The suspensions’ pH value was kept at 11 with a calculated content of sodium carbonate (anhydrous, VWR International Ltd., Radnor, PA, USA ≥99.5% ACS) to gain carbonated caCP nanoparticles. During the preparation process, the suspensions were stirred vigorously over 4 h at around 1400 rpm. The formed precipitates were cleaned thoroughly with distilled water and kept in an oven for 4 h at 150 °C. The resulting white nanopowders were gathered and prepared for further characterization and composite preparation.
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7

Preparation of Calcium Pyrophosphate Precursor

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Calcium chloride dihydrate (CaCl2.2H2O, Merck) and tri-sodium phosphate dodecahydrate (Na3PO4.12H2O, GRP rectapur, VWR Chemicals) were used as received, as calcium and orthophosphate sources, respectively. The pyrophosphate precursor, anhydrous tetrasodium pyrophosphate (Na4P2O7), was prepared by heating disodium hydrogen phosphate powder (Na2HPO4, VWR Chemicals) at 400°C during 15 hours in a muffle furnace. The formation of this salt was verified by XRD, Raman and 31P solid state NMR spectroscopies before its use (in particular, no residual orthophosphate entity was detected by NMR).
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8

Structural Analysis of hFGF1 Interactions

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The Quikchange II XL mutagenesis kit was from Agilent and the DNA plasmid isolation kit was from Qiagen Inc., USA. DH5α and BL-21(DE3) competent cells were obtained from Novagen Inc., USA. Lysogeny broth is a product of EMD Millipore, USA. Heparin sepharose resin is from GE Healthcare, USA. Buffer components (Na2HPO4, NaH2PO4, NaCl, and (NH4)SO4) were acquired from VWR Scientific., USA. Low molecular weight (~3000 Da) heparin sodium salt was obtained from Sigma and MP Biomedicals LLC. NIH 3T3 cells were obtained from ATCC and all the cell culture reagents including, DMEM media, fetal bovine serum (FBS) and penicillin streptomycin were purchased from Thermo Fisher Scientific (Waltham, MA). All measurements of the spatial distance between residues within hFGF1 were made using Pymol viewing software and were measured as the distance between side chain functional groups (carboxyl groups for D82 and D84, guanidinium group for R133, R82, and R84).
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9

Mouse Brain Perfusion and Sectioning

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At P67 ± 2, mice underwent terminal anaesthesia via intraperitoneal injection of 100 µl sodium pentobarbitone. This was followed by transcardial perfusion using 0.9 % heparinized saline (until the fluid exiting the cut right atrium was entirely clear), followed by 20–30 ml of 4 % paraformaldehyde dissolved in 0.1 M phosphate-buffered saline (PBS, 0.1 M NaH2–PO4·2H2O, 0.1 M Na2HPO4·12H2O, 0.15 M NaCl, all reagents purchased from VWR International, Poole, UK). Brains were rapidly removed from the skull and post-fixed in 4 % paraformaldehyde (PFA) for ~23 h, then cryoprotected by immersion in 30 % sucrose for ~72 h, before freezing them on dry ice and storing them at −80 °C until sectioning. A 1 in 4 series of coronal sections (20 µm) were cut using a cryostat (−22 °C, Bright Instruments Ltd., Huntingdon, UK) and the free-floating sections stored (−20 °C) in antifreeze solution (0.1 M NaH2PO4·H2O, 0.05 M Na2HPO4, 0.15 Mm NaCl, 50 % v/v ethanediol, 1 % w/v polyvinylpyrrolidone, 0.1 % w/v NaN3, VWR International).
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10

Biofluids NMR Sample Preparation

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Aliquots were thawed and 500 μL of serum was diluted to a final volume containing 50% (v/v) serum, 40% (v/v) dd 1H2O (18.2 MΩ), 10% (v/v) 1 M PO43− pH 7.4 buffer (Na2HPO4, VWR International Ltd., Radnor, PA, USA and NaH2PO4, Sigma-Aldrich, Gillingham, UK) in deuterium oxide (2H2O, Sigma-Aldrich) and 1.2 mM sodium azide (NaN3, Sigma-Aldrich). Samples were vortexed for 1 min, centrifuged at 13,000× g at 4 °C for 2 min and 600 μL transferred into 5 mm outer diameter NMR tubes (Bruker, Coventry, UK).
Urine & saliva samples were thawed at room temperature before addition of 500 μL to 500 μL of 1 M phosphate buffer (Na2HPO4 and NaH2PO4) at pH7.4 with 20% 2H2O, 200 μM TSP and 2.4 mM sodium azide. The samples were vortexed for 30 s prior to 5 min centrifugation at 21,500× g and 4 °C before transferring 600 μL of sample to Bruker SampleJet 5 mm (outer diameter) NMR tubes. The final concentration in the NMR tube was 50% urine or saliva, 10% 2H2O, 1.2 mM sodium azide and 100 μM TSP.
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