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Cleaved poly adp ribose polymerase parp

Manufactured by Cell Signaling Technology
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Cleaved poly (ADP-ribose) polymerase (PARP) is a lab equipment product that detects the cleaved form of PARP, a protein involved in DNA repair. It is used to measure apoptosis, or programmed cell death, in various cell-based assays.

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59 protocols using cleaved poly adp ribose polymerase parp

1

Western Blot Antibody Optimization

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The following antibodies and concentrations for western blotting were used: 1:1000 α-Tubulin (Calbiochem, San Diego, CA), 1:1000 Caspase-3 (Cell Signaling Technology, Danvers, MA), 1:1000 Cleaved poly(ADP-ribose) polymerase (PARP) (Cell Signaling Technology), 1:500 PARP (BD Pharmingen, San Jose, CA) and 1:1000 HIF-1α (Santa Cruz, Dallas, TX). Horseradish peroxidase-conjugated secondary antibodies for mouse and rabbit were used at a dilution of 1:10,000 (Jackson ImmunoResearch, West Grove, PA).
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2

Melatonin-Induced Apoptosis Signaling Pathway

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Melatonin (Supplementary Fig. 1A, available online), Giemsa solution, and MTT were purchased from Sigma-Aldrich. Pazopanib was purchased from Cayman Chemical. Fetal bovine serum (FBS) and penicillin/streptomycin were purchased from HyClone. Doramapimod (BIRB 796) was purchased from Merck Millipore. Z-VAD-FMK was purchased from BioVision. Western blotting antibodies against cleaved-caspase-3 (#9668), cleaved-caspase-9 (#9508), cleaved-poly (ADP-ribose) polymerase (PARP) (#9542), and Bax (#5023) were purchased from Cell Signaling Technology. Antibodies against phospho-p38 mitogen-activated protein kinase (p38MAPK; sc-166182), p38MAPK (sc-7972), Bcl-2 (sc-492), cytochrome c (sc-13156), β-actin (sc-69879), and small inhibitory RNA-LC3-II (LC3-II siRNA; sc-43390) were purchased from Santa Cruz Biotechnology. Antibodies against p62 (NBP 1-48320) and LC3-II (NB 100-2220) were purchased from Novus Biologicals. Secondary goat anti-rabbit immunoglobulin G (IgG) and goat anti-mouse IgG antibodies were purchased from Merck Millipore.
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3

Immunoblotting Assay for Apoptosis-Related Proteins

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Cells were harvested using a scraper and lysed with RIPA buffer (Thermo Scientific Pierce, #89900). Protein samples were sonicated for 20 s and quantified through the BCA assay method ( Thermo Fisher Scientific, Waltham, MA, USA). Total cellular lysates were separated on a 4–12% NuPAGE bis-tris gel (Thermo Fisher Scientific, Waltham, MA, USA) and transferred to nitrocellulose using standard protocols. Filters were blocked in PBS-Tween 20 with 5% skim milk and incubated overnight with primary antibodies specific for TRAIL-R2 (HPA023625; Sigma-Aldrich, St. Louis, MO, USA), survivin (#ab469; Abcam, Cambridge, UK), X-linked inhibitor of apoptosis protein (XIAP) (#2042; Cell Signaling Technology, Danvers, MA, USA), and cleaved Poly (ADP-ribose) polymerase (PARP) (#5625; Cell Signaling Technology, Danvers, MA, USA). A β-actin antibody (#ab8226; Abcam, Cambridge, UK) was used to ensure equal loading of proteins.
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4

Investigating HDAC and MDM2 inhibitors in cancer cells

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The histone deacetylase (HDAC) inhibitor SAHA was purchased from Selleckchem (Houston, TX, USA) and the MDM2 inhibitor RG7388 was purchased from MedChemExpress (Monmouth Junction, NJ, USA). The primary antibodies against p53, p21, p27, aurora kinase-B (AURK-B), cell division cycle 25C (CDC25C), cyclin dependent kinase 1 (CDK1), Bax, Bak, and cleaved poly (ADP-ribose) polymerase (PARP) (1:1000) were purchased from Cell Signaling Technology, (Danvers, MA, USA). MDM2 antibody (1:500 mouse monoclonal) was purchased from Santa Cruz Biotechnology, (Dallas, TX, USA). β-actin (1:2000) was purchased from Sigma Aldrich (St. Louis, MO, USA). The secondary antibodies anti-rabbit, anti-mouse, and horseradish-peroxidase (HRP) conjugated and dimethylsulfoxide (DMSO) were purchased from Sigma Aldrich. Nitrocellulose membrane (0.45 µm) was purchased from Amersham (GE Healthcare Life Sciences, Marlborough, MA, USA). ECL was purchased from KPL Biosolutions (Milford, MA, USA). DEVD-amc CellEventTM Caspase-3/7 Green ReadyProbeTM was purchased from Thermo Fisher (Molecular Probes, Life Technologies, Carlsbad, CA, USA). Other chemicals and reagents used in this experiment were of research grade.
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5

Apoptosis Signaling Pathway Profiling

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MDA-MB-231 cells were seeded at 106 cells/well in 6-well plates and allowed to attach overnight. Cells were then treated with fresh media containing LOE at 0.06 or 0.15 mg/ml for 3, 6, 12 and 24 h intervals. Treated cells were collected in RIPA buffer and sonicated to obtain lysates. Cell lysates were cleared of debris by centrifugation and protein concentration of lysates was estimated via the bicinchoninic acid (BCA) assay. Next, 20 µg of protein from each sample was subjected to SDS-polyacrylamide gel electrophoresis, transferred onto a polyvinyl difluoride (PVDF) membrane and immunoblotted. Primary antibodies for cyclin D1, cellular Inhibitor of Apoptosis Protein 2 (cIAP2), RIP1, cleaved caspase-8 and cleaved Poly-ADP Ribose Polymerase (PARP) were purchased from Cell Signaling Technologies, Danvers, MA, USA. Cleaved caspase-3 antibody was purchased from Epigenomics, WA. β-actin and β-tubulin antibodies were obtained from Sigma-Aldrich and Abcam, Cambridge, MA, USA, respectively. Quantification was carried out using ImageJ software (35 (link)).
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6

Analyzing Apoptosis Induction in Cells

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To analyze apoptosis, cells were trypsinized and plated into a six-well plate, and after 24 h, treated with EHGV (15.62 and 31.25 μg/mL) and CDDP (10 μM) for 48 h. Then, cells were lysed in 2× radioimmunoprecipitation assay (RIPA) buffer supplemented with protease and phosphatase inhibitors. Protein concentration was determined using the DC Protein Assay kit (BioRad, Hercules, CA, USA). Equivalent amounts of protein (50 μg) were separated by SDS-PAGE. The gels were then transferred to polyvinylidene fluoride (PVDF) membranes and blocked with 5% skim milk. Membranes were then incubated with primary antibodies against cleaved poly (ADP-ribose) polymerase (PARP) (Cell Signaling Technology, Danvers, MA, USA), cleaved caspase-3 (Cell Signaling Technology, Danvers, MA, USA) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Cell Signaling Technology, Danvers, MA, USA). Before blocking, the membranes were incubated with 1% glutaraldehyde for 30 min for the analysis of cleaved caspase-3 expression [30 (link)]. Detection was visualized with the ECL prime reagent (GE Healthcare, Sao Paulo, Brazil) and the images were then captured on a ChemiDoc Imaging system (Biorad, Hercules, CA, USA) using Image Lab software (Biorad, Hercules, CA, USA).
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7

Investigating Autophagy-Apoptosis Interplay

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BA was supplied by MedChemExpress, USA. CCK-8 kit, dorsomorphin, AICAR, CQ, and Rapamycin (Rap) were provided by Selleck Chemicals, USA. Hoechst 33342 was procured from Sigma, USA. RiboBio Co., China, supplied ATG7 siRNA (SIGS0005319-1). NAC (N-acetyl-L-cysteine) was provided by Beyotime Biotechnology, China. Z-VAD-FMK powder was provided by Feifan Wang. The apoptosis detection kit (Cat. 556547) was purchased from BD Biosciences, USA. Antibodies against Bmi-1 (ab126783), Bcl-2 (ab182858), mTOR (ab2732), p-mTOR (Ser 2448), Bax (ab32503), AMPKα (ab32047), and LC3B (ab192890) were purchased from Abcam, UK. Anti-β-actin antibody (20536-1-AP) was supplied by Proteintech, USA. Antibodies against p-ULK1 (Ser555; Cat. 5869), cleaved poly (ADP-ribose) polymerase (PARP) (Cat. 9541), p-AMPKα (Cat. 2535), SQSTM1/p62 (Cat. 8025), and cleaved caspase 3 (Cat. 9664) were procured from Cell Signaling Technology, USA.
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8

Protein Expression Analysis in Cells

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Protein blots were detected with primary antibodies to OSR1 (sc-376545; Santa Cruz Biotechnology, Santa Cruz, CA, USA), p21 (sc-6246; Santa Cruz Biotechnology), cyclin D1 (sc-8396; Santa Cruz Biotechnology), cyclin-dependent kinase 4 (CDK4; #2906; Cell Signaling Technology, Danvers, MA, USA), Fas (#4233; Cell Signaling Technology), cleaved caspase-3 (#9661; Cell Signaling Technology), cleaved poly-(ADP-ribose) polymerase (PARP; #5625; Cell Signaling Technology), cyclin B1 (sc-245; Santa Cruz Biotechnology), followed by a secondary antibody, and developed with enhanced chemiluminescence (Amersham, Arlington Heights, IL, USA). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH; sc-32233; Santa Cruz Biotechnology) served as a loading control.
Nuclear protein and cytoplasmic protein were extracted by NE-PER Nuclear and Cytoplasmic Extraction Reagents (Pierce; Thermo Fisher Scientific, Rockford, IL, USA). Nuclear protein was detected with p53 (sc-126; Santa Cruz Biotechnology) antibody and lamin A/C (612162; BD Biosciences, San José, CA, USA) was used as a loading control. Cytoplasmic protein was detected with β-catenin (#9582; Cell Signaling Technology) antibody and actin (sc-1615; Santa Cruz Biotechnology) was used as a loading control.
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9

Quantification of ERK and AKT Signaling Proteins

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The treated cells were lysed with RIPA buffer containing 1% protease inhibitor cocktails and 2% phenylmethanesulfonyl fluoride (PMSF) (all from Sigma-Aldrich). For the detection of ERK translocation, the preparation of cytoplasmic and nuclear extracts was carried out as described in a previous study by Yang et al (21 (link)). After the supernatant collection, the protein concentration was determined using the Bradford method. Proteins were separated on a 10% SDS-PAGE gel and transferred electrophoretically onto nitrocellulose membranes (Bio Basic, Inc., Markham, Ontario, Canada). The transferred membranes were then blotted with primary antibodies (dilution of 1:1,000) to: phosphorylated ERK (p-ERKs), total ERK (t-ERKs), phosphorylated AKT (p-AKT), total AKT (t-AKT), cleaved poly(ADP-ribose) polymerase (PARP), glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and lamin B (Cell Signaling Technology, Inc., Danvers, MA, USA) at 4°C overnight, followed by treatment with horseradish peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology, Inc., Dallas, TX, USA). Chemiluminescence was detected using ECL detection kits (GE Healthcare, Buckinghamshire, UK). The intensity of the bands was quantified by scanning densitometry using Quantity One 4.5.0 software (Bio Basic, Inc.).
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10

Mitochondrial Dysfunction and Cell Death Analysis

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CM-H2-DCFDA, JC-1, rotenone, antimycin-A and both reduced and non-reduced Mito Tracker were obtained from Invitrogen (Thermo Fisher Scientific, Inc.). The antibodies against PHB1 and cyclooxygenase (COX) IV were purchased from Abcam, while the Annexin V-FITC apoptosis kit was obtained from Becton, Dickinson and Company. The antibodies against β-actin, cleaved poly(ADP-ribose) polymerase (PARP) and cleaved caspase-3 were obtained from Cell Signaling Technology, Inc. and DAPI from MilliporeSigma.
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