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12 protocols using dnase

1

Islet Isolation from Lewis Rat Pancreas

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Lewis rats were overdosed with isoflurane immediately prior to pancreas harvesting. Pancreas were perfused through the pancreatic duct with 9 mL CIzyme RI collagenase (Vitacyte) and 0.2 µg/mL DNAse (dornase alfa; Genentech) in Hanks balanced salt solution (HBSS; Gibco) with 10 mM HEPES (Gibco). Digestion was performed via static incubation in a water bath at 37 °C for 19 min and 40 s. Next, enzymatic activity was quenched by adding 20 mL of 20% fetal bovine serum (FBS; Gibco) in HBSS and mechanical dissociation performed via vigorous shaking for 8 s. Tissue digest was washed 3 times with ice cold HBSS and strained through a 500 µm wire mesh. The tissue pellet was re-suspended in 15 mL 1.096 g/cm3 OptiPrep (Sigma) and layered with 10 mL 1.068 g/cm3 and 1.037 g/cm3 OptiPrep and centrifuged at 480 × g for 20 min with no break. Islets were collected at the 1.096 g/cm3 and 1.068 g/cm3 interphase, washed with HBSS 3 times and cultured in RPMI-1640 media supplemented with 10% FBS, 1% penicillin/streptomycin, 20 mM HEPES, 5.5 mM glucose and 1 mM sodium pyruvate (all from Gibco) in a cell culture incubator set at 25 °C and 5% CO2.
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2

Metastatic Melanoma Sample Preparation

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Twelve metastatic melanoma samples were obtained from patients that were not undergoing therapy at the time of sample collection. Patients had undergone a wide range of prior therapies, including surgery, chemotherapy, radiotherapy, immunotherapy, or none of the above. PBLs were obtained by either leukapheresis or venipuncture, prepared over Ficoll-Hypaque gradient (LSM; ICN Biomedicals Inc.), and cryopreserved until analysis. After surgical resection, tumor specimens were processed as previously described (18 (link)). Briefly, tumor specimens were minced, enzymatically digested overnight at room temperature or for several hours at 37°C (RPMI-1640 with l-glutamine [Lonza], 1 mg/ml collagenase IV [Sigma-Aldrich], 30 U/ml DNAse [Genentech], and antibiotics) and the tissue was separated mechanically using gentleMACS (Miltenyi Biotech). Tumor single-cell suspensions were cryopreserved.
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3

Isolation and Culture of Human Islets

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Freshly isolated human islets were extracted from deceased donor pancreata by the UCSF Islet Production Core (San Francisco, CA). The islets were cultured overnight after isolation at 5% CO2 and 37°C in Connaught Medical Research Laboratories (CMRL) 1066 medium (Nucleus Biologics, CA) NIH CIT supplemented with the addition of 0.5% Human Serum Albumin (Grifols, Spain), 10 U/mL of Heparin (Fresenius Kabi, Germany), 2 μg/mL DNAse (Genentech, CA) and 20 μg/mL Ciprofloxacin (Hospira, IL). Human islets were also sourced from Prodo Laboratories, Inc (Aliso Viejo, CA) and cultured with their proprietary medium (PIM(S) supplemented with Human AB Serum).
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4

Culturing Human Islet Cell Aggregates

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Human islets of Langerhans not used for clinical islet transplantation were provided by the Leiden University Medical Center, Leiden, The Netherlands. Organs donors (4M/6F) had an average age of 50 ± 13 years and BMI of 23 ± 3 kg/m2 (Fig. S1). Islets were dispersed into single cells by adding 0.025% trypsin solution containing 10 μg/ml DNase (Pulmozyme, Genentech, San Francisco, CA, USA) and seeded onto agarose microwells for controlled cell aggregation. Intact islets and human islet cell aggregates were cultured in CMRL 1066 medium (5.5 mM glucose) (Mediatech, Manassas, VA, USA) supplemented with 10% foetal calf serum, 20 μg/ml ciprofloxacin, 50 μg/ml gentamycin, 2 mM L-glutamine, 0.25 μg/ml fungizone, 10 mM HEPES and 1.2 mg/ml nicotinamide. Cell cultures were maintained at 37°C in a 5% CO2 humidified atmosphere. Medium was refreshed every 3–4 days.
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5

Isolation and Culture of Human Islets

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Human islet isolations from cadaveric human organ donors were performed in the Good Manufacturing Practice facility of the Leiden University Medical Center according to the method used in the center for the procurement of clinical-grade material (Nijhoff et al., 2016 (link)). Islets were isolated from donor pancreas allocated (after anonymization) by Eurotransplant for the clinical islet transplantation program of the Leiden University Medical Center. Islets were used for research only if they could not be used for clinical purposes, and if research consent was obtained according to Dutch national laws.
Islets were cultured in CMRL 1066 medium (Corning, 5.5 mmol/l glucose) containing 10% FCS (Bodinco), 20 mg/ml ciprofloxacin (Fresenius), 50 mg/ml gentamycin (Lonza), 2 mM L-glutamine (Lonza), 10 mM HEPES (pH 7.21, Lonza), and 1.2 mg/ml nicotinamide (prepared by the Leiden University Medical Center pharmacy) in a humidified atmosphere with 5% CO2. Islets were dispersed into single cells by adding 0.025% trypsin solution containing 10 mg/ml DNase (Pulmozyme, Genentech) at 37°C for 6–8 min.
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6

Neutrophil-Mediated Coagulation Modulation

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Purified neutrophils (500 µl, 1×105/ml, in RPMI without serum) were incubated with RPMI, Agaphelin (1 µM) or DNAse (Dornase alfa, Genentech Inc. 4 µg/ml) at 37°C for 1 hr, prior stimulation with RPMI (negative control), or 50 nM PMA (at 37°C for 3 h). Then 50 µl of this suspension was added to 50 µl of fresh plasma (collected in citrate) in a coagulometer cuvette (KC4 Delta Coagulometer, Tcoag Ireland Limited, Wicklow, Ireland). Reactions were started by addition of 12.5 mM CaCl2 (final concentrations).
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7

T Cell Cytotoxicity Assay Protocol

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Two days prior to co-culture, T cells were thawed in T cell media containing 3 U/mL DNase (Genentech Inc.) overnight. Tumor cells were seeded at desired density on this day in T cell media. After 24 h, T cells were cultured in T cell media supplemented with 300 IU/mL IL-2 for 24 h. T cells were co-cultured with tumor cells at various effector: target (E:T) ratios for specified durations. After co-culture, T cells were removed by washing tumor cells with PBS and tumor cells were detached using trypsin. Cells were stained with fixable Live/Dead dye (Invitrogen) followed by human anti-CD3 antibody (clone SK7, BD) in FACS staining buffer (PBS + 0.2% BSA). Cell counts were normalized with CountBright Absolute Counting Beads (Invitrogen) by FACS.
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8

T Cell Cytotoxicity Assay Protocol

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Two days prior to co-culture, T cells were thawed in T cell media containing 3 U/mL DNase (Genentech Inc.) overnight. Tumor cells were seeded at desired density on this day in T cell media. After 24 h, T cells were cultured in T cell media supplemented with 300 IU/mL IL-2 for 24 h. T cells were co-cultured with tumor cells at various effector: target (E:T) ratios for specified durations. After co-culture, T cells were removed by washing tumor cells with PBS and tumor cells were detached using trypsin. Cells were stained with fixable Live/Dead dye (Invitrogen) followed by human anti-CD3 antibody (clone SK7, BD) in FACS staining buffer (PBS + 0.2% BSA). Cell counts were normalized with CountBright Absolute Counting Beads (Invitrogen) by FACS.
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9

Cryopreserved Bone Marrow Mononuclear Cells

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Human bone marrow aspirates were obtained from healthy volunteers after informed consent in accordance with the Declaration of Helsinki, under an Institutional Review Board-approved clinical protocol (NCT00442195). Mononuclear cells were separated using Ficoll-Hypaque density gradient centrifugation (MP Biomedicals) and stored in CryoStor CS5 freezing medium (Biolife Solutions) under liquid nitrogen vapor phase until use. For analysis, cells were thawed in PBS supplemented with 2mM EDTA, 0.5% HSA (Baxter Healthcare Corporation), 10 units/mL DNase (Genentech, Inc.) and 2.5mM MgCl2.
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10

Isolation of Human Bone Marrow Mononuclear Cells

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Human bone marrow aspirates were obtained from healthy volunteers (all male aged 30, 40, and 52 years old) after informed consent in accordance with the Declaration of Helsinki, under an Institutional Review Board-approved clinical protocol (NCT00442195). Mononuclear cells were separated using Ficoll-Hypaque density gradient centrifugation (MP Biomedicals) and stored in CryoStor CS5 freezing medium (Biolife Solutions) under liquid nitrogen vapor phase until use. For analysis, cells were thawed in PBS supplemented with 2mM EDTA, 0.5% HSA (Baxter Healthcare Corporation), 10 units/mL DNase (Genentech, Inc.) and 2.5mM MgCl2.
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