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7 protocols using lsm 510 pascal

1

Confocal Imaging of Fly Samples

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For a given experiment, flies were age-matched and dissected on the same day, and then samples were processed identically for immunostaining and imaging. Samples were imaged as 12-bit stacks using either a Zeiss LSM 510 Pascal or a Zeiss LSM 700 laser-scanning confocal microscope. To prepare images for publication, FIJI was used to convert stacks to 8-bit, prepare maximum projections, apply Look-Up Tables (LUTs), and merge channels when applicable. Processed images were saved as TIFFs and then cropped in Adobe Photoshop.
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2

Quantification and Localization of Sphingolipid Signaling in Aortic Atherosclerosis

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Aortae from the origin to the aortoiliac bifurcation were harvested. Spread aortae and cross-sections of aortic sinus and abdominal aorta were stained with ORO. The ORO-positive area over total en face are in each aorta was quantified using ImageJ (NIH) software. Immunofluorescent staining of aortic cryosections and macrophages were performed as described previously54 (link) with the following antibodies: SphK1 (rabbit polyclonal, kindly donated by Dr. Yoshiko Banno)49 (link), SphK2 (Proteintek #17096-1-AP), p62 (#610832, BD Biosciences), LAMP2 (#550292, BD Biosciences), F4/80 (MCA497RT, Abd Serotec), LC3A/B (#12741, Cell signaling technology (CST)), LC3 mAb (#M186-3, MBL (Nagoya, Japan)), EEA1 (#610456, BD Biosciences), Rab7 (R8779, Sigma Aldrich). Cell nuclei were counterstained with 4′6-diamidino-2-phenylindole (DAPI) (#D1306, Molecular Probes). Stained specimens were observed by confocal fluorescence microscope (LSM 510 Pascal; Carl Zeiss) and quantified by using ImageJ or ZEN 2.1 software (Carl Zeiss).
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3

Microscopic Examination of Bacterial Cellulose

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After cultivation for 14 days in sBTS, the bacterial cellulose-based pellicle samples were fixed in formaldehyde vapor during 1 h and stained with calcofluor (excitation 405 nm, filter BP 420–480) and thiazine red dyes (excitation 514 nm, filter BP 530–600 nm). A microscopic examination of sample fluorescence was performed, using CSLM AXIOSKOP-2 ZEISS equipped with the LSM 510 PASCAL (CarlZeiss, FRG) software.
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4

Multimodal Microscopic Imaging of Zebrafish

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For bright-field imaging, a SteREO Discovery V20 stereomicroscope (Zeiss) or a BX50 microscope (Olympus) was used. For confocal imaging, embryos were mounted in 1% low melting temperature agarose (Lonza) on confocal dishes (SPL Life Sciences) and imaged under an LSM 510 Pascal, or an LSM 700 confocal laser scanning microscope (Zeiss). Images were acquired by Zen Black (version 8.1, Zeiss) and assembled using Adobe Photoshop (version CS6). An SP8 intravital multiphoton microscope (Leica) at Korea Basic Science Institute was used to image beating motile cilia in zebrafish embryos, and images were captured using LAS X (Leica)
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5

Fluorescent Staining of Biological Samples

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Samples were fixed in the formaldehyde vapour during an hour and stained with calcofluor (excitation 405 nm, filter BP 420-480), ethidium bromide (Sigma, USA) (excitation 514 nm, filter BP 530-600 nm), and thiazine dyes (excitation 514 nm, filter BP 530-600 nm). A microscopic examination of sample fluorescence was performed, using CSLM AXIOSKOP -2 ZEISS equipped by the LSM 510 PASCAL (CarlZeiss, FRG) software.
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6

3D Analysis of Neuronal Morphology

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Morphological analyses were conducted with a LSM510 Pascal (Zeiss) confocal scanning microscope. Optical sections were acquired at 1.0-1.3-mm intervals and reconstructed three-dimensionally with Amira software ver. 5.5 (Visage Imaging GmbH). Selected neuronal regions were further processed using surface and volume rendering functions to calculate the volume of the region of interest and generate 3D reconstructions. The terminal varicosities were readily identifiable from the characteristic swellings located around the tips of axonal branches [18] .
The distribution pattern of PNs' dendritic terminals within the central region of the glomerulus (20 mm in thickness, corresponding to 15-16 optical sections) was detected using Amira software, and further processed by means of a custom-written Excel macro (Microsoft, 2010 version) for glomerular size normalization. The shortest distance from the lateral half outline of each glomerulus was then quantified.
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7

Confocal Microscopy of Cell Walls

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Confocal Scanning Laser Microscopy (CSLM) Samples were fixed in the formaldehyde vapor during an hour and stained with calcofluor (excitation 405 nm, filter BP 420-480), and thiazine dyes (excitation 514 nm, filter BP 530-600 nm). A microscopic examination of sample fluorescence was performed, using CSLM AXIOSKOP -2 ZEISS equipped by the LSM 510 PASCAL (CarlZeiss, FRG) software.
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