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6 protocols using hepes buffer

1

Preparation of SARS-CoV-2 Reference Materials

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RM 1 and RM 2 were prepared by GBD mbH by diluting the SARS-CoV-2 positive cell culture supernatant as follows:
Dilution was performed using cell culture medium (Minimal Essential Medium, PanBioTech, Aidenbach, Germany) supplemented with non-essential amino acids (PanBioTech); HEPES buffer (PanBioTech) and fetal bovine serum (PanBioTech, gamma irradiated; 15% v/v for supplemented cell culture medium).
In total 2,300 vials each of RM 1 and RM 2 (1.1 mL per vial) were aliquoted in screw cap micro tubes (2.0 mL; Sarstedt, Nuermbrecht, Germany). Before lyophilization, primary freezing of the filled micro tubes was performed at -30 °C (4–12 hours) followed by freezing at -70 °C over night.
Process controlled lyophilization was performed in an Epsilon 2-10D LSC freeze dryer (Martin Christ Gefriertrocknungsanlagen GmbH, Osterode, Germany). The gradual lyophilization profile over a period of 72 hours included: (i) a temperature change from -70 °C to 20 °C and (ii) a pressure change from atmospheric pressure to 6 x 10−2 bar. At the end of lyophilization, the micro tubes were manually topped with screw caps. The RMs were stored at <-20 °C until they were shipped to the laboratories at ambient temperature.
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2

Cytotoxicity of Radiation Exposure on Human Cells

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The monocytic cell line THP-1 and alveolar epithelium cell line A549 were used to quantify the toxicity of the irradiation on human cells. Both cell lines were incubated at 37 °C in a 5% CO2 atmosphere in ambient humidified air. THP-1 cells were grown in RPMI 1640 (Gibco™ RPMI 1640 Medium, GlutaMAX™, Life Technologies Limited, Paisley, UK) containing phenol red, supplemented with 0.01 M HEPES Buffer (PAN-Biotech, Aidenbach, Germany), 10% v/v fetal bovine serum (FBS superior stabil, Bio&Sell, Feucht, Germany) and 0.2% v/v 2-mercaptoethanol (SERVA Electrophoresis, Heidelberg, Germany). The A549 cells were incubated in DMEM medium (DMEM, high glucose, Life Technologies Limited, Paisley, UK) containing phenol red, supplemented with 10% v/v fetal bovine serum (FBS superior stabil, Bio&Sell, Feucht, Germany) and 1 mM sodium pyruvate (Life Technologies Limited, Paisley, UK). Both cell culture media were supplemented with 1% v/v Penicillin–Streptomycin (PAN-Biotech, Aidenbach, Germany).
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3

Culturing Multiple Myeloma and CIK Cells

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KMS 18 (University of Leeds, Leeds, England) and U-266 (DSMZ, Braunschweig, Germany) are both cell lines derived from patients suffering from multiple myeloma. Both cell lines were cultured in 75 cm 2 culture flasks using RPMI-medium (PAN Biotech, Aidenbach, Germany) supplemented with 10% fetal calf serum (FCS) (Gibco Life Technologies, Darmstadt, Germany) and 1% penicillin/streptomycin (P/S) (Life Technologies, Darmstadt, Germany). Cells were kept at 37 °C and 5% CO2. New Medium was added every 3 days and completely replaced at least once a week or whenever deemed necessary. Cells were split weekly or whenever splitting was required.
CIK cells were cultured in RPMI-medium supplemented with 10% FCS and 1% P/S. Additionally the medium was buffered with 2.5% HEPES buffer (PAN Biotech). Every 3 days part of the medium was renewed and 300 U·mL 1 interleukin-2 (IL-2) (Immuno Tools, Friesoythe, Germany, and, Novartis Pharma GMBH, Nuernberg, Germany) was added to the culture flask. CIK cells were not centrifuged, unless part of the culture was harvested for further experiments.
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4

Cytokine-Induced Killer Cell Generation

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CIK cells were isolated from PBMCs derived from healthy blood donors and generated according to the established CIK cell generation standard protocol (20). CIK cells were grown in RPMI 1640 medium with 2.5% (v/v) of HEPES buffer (both from PAN-Biotech GmbH, Aidenbach, Germany), 10% (v/v) heat inactivated FCS, 1% P/S (both Gibco® by life science technologies™, Carlsbad, CA, U.S.A.) and were incubated aseptically at 37 °C with 5% CO2. The flask incubated at 37 °C with 5% CO2 for 1–2 h to get rid of monocytes that adhere to the flask. Of RhIFNγ 1000 IU/mL (R&D Systems Inc., Minneapolis, ME, U.S.A.) was initially added to CIK cells for 24 h, followed by 300 IU/mL interleukin-2 (Novartis Pharma AG, Basel, Switzerland), 50 ng/mL anti-human anti-CD3 mAb and 100 IU/mL interleukin-1β (both from eBioscience Inc., San Diego, CA, U.S.A.). interleukin-2 was replenished every third day of culture. The cells were used for investigation after eight days of culture.
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5

Isolation and Culture of HUVECs

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Human umbilical vein endothelial cells (HUVECs) are cells derived from the endothelium of veins from healthy human donor umbilical cords, following the procedure described by Jaffe et al. [29 (link)]. Isolated HUVECs were centrifuged and the cell pellet was plated on gelatin pre-coated flasks and incubated for 24 h at 37 °C, 5% CO2 in growth medium consisting of Medium 199 (M199) (PAN-Biotech, Dorset, UK), fetal bovine serum (FBS) (PAN-Biotech, Dorset, UK), penicillin–streptomycin solution (PAN-Biotech, Dorset, UK), glutamine (PAN-Biotech, Dorset, UK), HEPES buffer (PAN-Biotech, Dorset, UK), sodium heparin, and bovine retina-derived growth factor. The next day the medium was replaced to remove red blood cells.
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6

Cryogel Biochip Functionalization with Aminofluorescein

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After cross-linking inside the biochip, the cryogel was functionalized with aminofluorescein (Sigma).
For 1 mL of 50 mM MES solution, 12 µL of a stock solution of 1 mM aminofluorescein and 27 µL of a stock solution of EDC solution at 100 mg/mL in MES were mixed and injected into the alginate cryogelintegrated biochips. After 24 h incubation, the samples were then washed thoroughly with PBS and subsequently imaged by confocal microscopy (Zeiss LSM 710). supplemented with 10% fetal bovine serum (FBS, Gibco), 2 mM L-Glutamine (PAN BIOTECH), 0.1 mM nonessential amino acids (Gibco), 1 mM sodium pyruvate (Gibco), 1% HEPES buffer (PAN BIOTECH) and 100 units/mL of penicillin-streptomycin (PAN BIOTECH). Maintenance of HepG2/C3A cells was performed in 75 cm² flasks at 37 °C in 5% CO2 incubator. The cells were passaged weekly at nearly full confluence and the medium was replaced every 2 days.
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