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5 protocols using alexa fluor 488 affinipure donkey anti mouse

1

Immunofluorescence Analysis of m6A in Oocytes and Embryos

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Oocytes and embryos were exposed to acidic Tyrode solution for a few seconds to remove the zona pellucida, followed by three washes in M2 medium. Samples were then fixed in 4% paraformaldehyde in phosphate-buffered saline for 30 min, and permeabilized in 0.5% Triton X-100 for 2 h at room temperature. Samples were blocked with 1% bovine serum albumin for 1 h, and incubated with m6A antibody (Abcam, ab208577, 1:200) overnight at 4 °C. Samples were labeled with secondary antibody (Alexa Fluor 488 AffiniPure Donkey Anti-Mouse, Jackson 715–545-151, 1:500) for 1 h. DNA was stained with DAPI (Roche, 5 μg ml−1) for 10 min. After staining and washing, samples were mounted on glass slides using Vectashield mounting medium (Vector Labs) and examined with a confocal laser-scanning microscope (Nikon). Images were analyzed with NIS-Element AR 3.0 software.
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2

Immunofluorescence Labeling of Oocytes

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Oocytes were incubated with 0.5% Triton X-100 for 5 min and then fixed with 4% paraformaldehyde for 30 min. Fixed oocytes were blocked in PBS containing 1% BSA, 0.1% Tween-20 and 0.01% Triton X-100 for 1 h. Oocytes were incubated for 48 h at 4 °C with primary antibodies: rabbit anti-CENPF (Abcam ab5; 1:700), mouse anti-Lamin B1 (Abcam ab8982; 1:400), human anti-centromere (Antibodies Incorporated 15-234-0001; 1:500), mouse anti-DRP1 (Abcam ab56788; 1:200), mouse anti-Tubulin (Abcam; 1:1000) rabbit anti-Tubulin (Abcam ab6046; 1:500) and mouse anti-cMyc (Thermo Fisher R950-25; 1:200). Secondary antibodies used were Rhodamine (TRITC) AffiniPure Donkey Anti-Rabbit (Jackson 711-025-152; 1:750), Alexa Fluor 647 AffiniPure Donkey Anti-Human (Jackson 709-605-149; 1:500), and Alexa Fluor 488 AffiniPure Donkey Anti-Mouse (Jackson 715-545-151; 1:500). DNA was stained with 10 μg/ml Hoechst 33342 (Sigma-Aldrich, St. Louis, MO, USA).
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3

Immunofluorescence and Western Blot Analysis

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The following primary antibodies were used: GFP (A10262, Thermo Fisher, 1:500; RRID: AB_2534023), K48-linked ubiquitin (05-1307, Millipore; 1:500; RRID: AB_1587578), MAP2 (NB300-213, Novus Biologicals; 1:500; RRID: AB_2138178), p62 (ab56416, Abcam; 1:200; RRID: AB_945626), phospho-α-Syn Ser129 (ab51253, Abcam; 1:500 for immunofluorescence, 1:2500 for western blot; RRID: AB_869973), α-Syn (610787, BD Biosciences; 1:1000; RRID: AB_398108), and p62 lck ligand (610832, BD Biosciences; 1:100; RRID: AB_398151).
The following secondary antibodies were used: Alexa Fluor 488 AffiniPure Donkey anti-chicken (703-545-155, Jackson ImmunoResearch; 1:250), Alexa Fluor 647 AffiniPure Donkey anti-chicken (703-605-155, Jackson ImmunoResearch; 1:250), Cy3 AffiniPure Donkey anti-rabbit (711-165-152, Jackson ImmunoResearch; 1:250), Alexa Fluor 488 AffiniPure Donkey anti-mouse (715-545-150, Jackson ImmunoResearch; 1:250), Cy3-conjugated AffiniPure Goat anti-mouse IgG (115-165-003, Jackson ImmunoResearch; 1:1000), Cy3-conjugated AffiniPure Goat anti-rabbit (111-165-045, Dianova; 1:1000; RRID: AB_2338003), and HRP-conjugated goat anti-rabbit (A9169, Sigma; 1:5000; RRID: AB_258434).
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4

Immunofluorescent Analysis of Mitotic Spindle Proteins in Oocytes

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The zona pellucida of oocytes were removed with an acidic M2 medium, and then zona-free oocytes were fixed on the glass slide using chromosome spread solution containing 0.15% Triton X-100, 1% paraformaldehyde and 3 mM dithiothreitol. Immunofluorescent staining was performed after the slides were dried for 12 h. Primary antibodies used were rabbit anti-CENPF (Abcam ab5; 1:50), mouse anti-DRP1 (Abcam ab56788; 1:50), rabbit anti-DRP1 (Abcam ab180769; 1:100), mouse anti-DRP1(BD Biosciences 611112; 1:50), rabbit anti-BUB1 (Abcam ab9000; 1:50), rabbit anti-BUBR1 (Proteintech 115042-AP; 1:100), rabbit anti-APC2 (Proteintech 13559-1-AP; 1:50), rabbit anti-MAD1 (Abcam ab175245; 1:50), rabbit anti-MAD2 (Biolegend 924601; 1:50), human anti-centromere (CREST, Antibodies Incorporated 15-234-0001; 1:100), rabbit anti-REC8 (Proteintech 10793-1-AP; 1:50), rabbit anti-SMC3 (Abcam ab128919; 1:50) and mouse anti-Myc (Thermo Fisher R950-25; 1:100). Secondary antibodies used were Alexa Fluor 647 AffiniPure Donkey Anti-Human (1:50), Rhodamine (TRITC) AffiniPure Donkey Anti-Mouse (Jackson 715-025-150; 1:100), Alexa Fluor 488 AffiniPure Donkey Anti-Mouse (1:100), Alexa Fluor 488 AffiniPure Donkey Anti-Rabbit (Jackson 711-545-152; 1:100), and Rhodamine (TRITC) AffiniPure Donkey Anti-Rabbit (1:100). DNA was stained with 10 μg/ml Hoechst 33342.
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5

Neuronal Cultures Immunostaining Protocol

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Myc (to visualize soma targeted receptor) and tdTomato (for M13-CaM transfection confirmation) staining for neuronal cultures was accomplished as follows: individual cultures were rinsed three times in PBS, pH 7.4; slices were blocked in 10% normal donkey serum (Jackson ImmunoResearch, 017-000-121) and 0.1% Triton-X for 30 min and inserted into a shaking incubator set to 23 °C at 120–130 RMP; incubated with a mixture of RFP antibody pre-absorbed (1:1000 in blocking reagent, Rockland antibodies & assays, 600-401-379) and Anti-Myc tag antibody (1:1000 in blocking reagent, Abcam, #ab32) for 90 min in room temperature shaking incubator; rinsed in PBS three times with 5-min incubation periods each time; incubated in Cy3-AffiniPure Donkey Anti-Rabbit IgG (H + L) (1:500, Jackson ImmunoResearch, 711-165-152) and Alexa Fluor 488 AffiniPure Donkey Anti-Mouse (1:500, Jackson ImmunoResearch, 715-545-150) for 30 minutes at room temperature shaking incubator; rinsed with PBS three times with 5-min incubation periods; mounted with DAPI Fluoromount-G (Southern BioTech, 0100-01). All cultures were imaged with a confocal microscope (Zeiss LSM880).
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