The largest database of trusted experimental protocols

Nexera xr lc system

Manufactured by Shimadzu
Sourced in Australia, Germany

The Nexera XR LC system is a high-performance liquid chromatography (HPLC) instrument designed by Shimadzu. It is capable of performing various liquid chromatography techniques to separate, identify, and quantify components in a sample.

Automatically generated - may contain errors

4 protocols using nexera xr lc system

1

HPLC-Fluorescence for RDV and GS-441524

Check if the same lab product or an alternative is used in the 5 most similar protocols
For detection and analysis of RDV and GS-441524, our previously validated HPLC with fluorescence detection was utilised, using a Shimadzu Nexera XR LC system (Rydalmere, NSW, Australia) (Kimble et al. 2023 (link)). The Waters X-Bridge C18, 5 µm, 150 × 4.6 mm (Dundas, NSW, Australia) was selected as the stationary phase with the column temperature maintained at 35 °C. Flow rate was set at 1.2 mL/min and analytes monitored with excitation and emission wavelengths of 250 nm and 475 nm, respectively. For screening of GS-704277, GS-441524 and RDV, a mixture of 20 mM of ammonium acetate (adjusted to pH 4.5 with acetic acid) with solutions of either 5% of acetonitrile (Mobile phase A) or 70% of acetonitrile (Mobile phase B) were prepared for the following gradient: 0–1 min (0–5% B); 1–2 min (5% B); 2–5 min (5–50% B); 5–10 min (50–90% B); 10–11 min (90% B); and 11–12 min (90–0%). Total run time was 15 min to equilibrate the condition; where retention times of GS-441524 and RDV were 4.78 and 9.95 min, respectively. For monitoring the RDV peak area for both in vitro t1/2 and intrinsic clearance, isocratic mobile phase (45% MeCN in 20 mM of ammonium acetate, adjusted to pH 4.5 with acetic acid) was used.
+ Open protocol
+ Expand
2

Quantitative Analysis of GS-441524

Check if the same lab product or an alternative is used in the 5 most similar protocols
For detection and analysis of GS441524, a Shimadzu Nexera XR LC system (Rydalmere, NSW, Australia) was used. For the mobile phase, a mixture of 20 mM of ammonium acetate (adjusted to pH 4.5 with acetic acid) with solutions of either 5% of acetonitrile (A) or 70% of acetonitrile (B) prepared for following gradient: 0–1 min (0–5% B), 1–2 min (5% B), 2–5 min (5–50% B), 5–10 min (50–90% B), 10–11 min (90% B), and 11–12 min (90–0%) at a flow rate of 1.2 mL/min. A total run time was 15 min in order to equilibrate the condition. After testing several columns (Synergi 4 µm, 150 × 4.6 mm, Hypersil ODS 5 µm, 4.6 mm × 150 mm, and Discovery® C18, 5 µm, 4.6 mm × 250 mm), the Waters X-Bridge C18, 5 µm, 150 × 4.6 mm (Dundas, NSW, Australia) was selected as the stationary phase with the column temperature maintained at 35 °C. A fluorescence detector (RF-20A xs) (Shimadzu, Rydalmere, NSW, Australia) was used to monitor GS-441524 with excitation and emission wavelengths of 250 nm and 475 nm, respectively.
+ Open protocol
+ Expand
3

Quantitative metabolite profiling by LC-HRMS

Check if the same lab product or an alternative is used in the 5 most similar protocols
For sample preparation, the samples were defrosted and shaken on a vortex shaker. The analysis was carried out in triplicate for each sample by liquid chromatography with high-resolution mass spectrometric.
The chromatographic separation was performed using a Nexera XR LC system (Shimadzu, Duisburg, Germany). A Nucleodur® C18 Gravity-SB column (150 × 2 mm, 3 µm) with a 4 × 2 mm Gravity SB guard column (Macherey-Nagel, Düren, Germany) was taken for separation and as the mobile phase, ACN and water (+0.1% FA each) were used for gradient elution. The further parameters for the chromatographic conditions are reported in the Supplementary Material (Table S4).
For the data acquisition, an LTQ Orbitrap XLTM mass spectrometer with heated electrospray ionization (HESI) (Thermo Fisher Scientific, Dreieich, Germany) in positive ionization mode was used. The further parameters are reported in the Supplementary Material (Table S5). The data analysis was carried out using the XcaliburTM software (Thermo Fisher Scientific, Dreieich, Germany).
+ Open protocol
+ Expand
4

Qualitative LC-HRMS/MS Analysis of Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Qualitative LC-HRMS/MS analysis was conducted on a Nexera XR LC system (Shimadzu, Duisburg, Germany) coupled to a Sciex X500R QTOFMS instrument (Sciex, Darmstadt, Germany). The LC conditions were equal to those described for the HPLC-4000 QTRAP ® system. The general mass spectrometry settings were as follows: SWATH ® , polarity positive, ion source gas 1: 40 psi; ion source gas 2: 60 psi; curtain gas: 35 psi; CAD gas: 7 psi; temperature: 600 • C, spray voltage 5500 volts, and those for the MS as follows: m/z 105-1000; accumulation time: 200 ms; declustering potential 60 volts; collision energy 10 volts, and those for the MS/MS as follows: m/z 50-1000; accumulation time: 70 ms; charge state 1; declustering potential 60 volts; collision energy 35 volts; collision energy spread 15 volts, with 36 windows overlapping by 1 Da.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!