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Mabe305

Manufactured by Merck Group

MABE305 is a laboratory equipment model manufactured by Merck Group. It is designed for precise and accurate measurements in scientific research and analysis applications. The core function of MABE305 is to provide reliable and consistent data collection.

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2 protocols using mabe305

1

Chromatin Immunoprecipitation Validation Protocol

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Chromatin immunoprecipitation (ChIP) was performed as previously described (28 (link),29 (link)). Please see Supplementary Materials, available at Carcinogenesis Online, for details. The following primary antibodies were used: anti-acetyl-Histone H3Lys27 rabbit antibody (H3K27ac, Millipore, 07-360), anti-acetyl-Histone H3Lys9 rabbit antibody (H3K9ac, Millipore, 07-352), anti-trimethyl-Histone H3Lys27 rabbit antibody (H3K27me3, Millipore, 07-449), anti-DNMT3B rat antibody (Millipore, MABE305) or anti-OCT1 mouse antibody (Millipore, MAB5434). ChIP DNA was used as a template for QPCR (quantitative ChIP [qChIP]). Twenty-five nanogram input, antibody-bound and IgG-bound DNA was used as starting material in all conditions. Levels of H3K27ac, H3K9ac, H3K27me3, DNMT3B, and OCT1 binding were expressed as (Bound-IgG)/Input. Primers used for ChIP validation are depicted in Supplementary Table S1C, available at Carcinogenesis Online.
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2

Western Blot for DNMT3B Protein

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Total protein extract was obtained using RIPA buffer. Samples were subjected to electrophoresis in fast cast SDS-PAGE gels according to the manufacturer’s protocol (Bio-Rad). Next, the separated proteins were transferred onto an TransBlot Turbo Polyvinylidene Fluoride (PVDF) membrane using a Trans-Blot Turbo Transfer System (Bio-Rad). PVDF membranes were imaged on the Bio-Rad ChemiDoc imaging system to verify transfer. Membranes were blocked in EveryBlot Blocking Buffer for 5 min at room temperature and then incubated overnight at 4 °C with the primary monoclonal antibody, anti-DNMT3B (1:2000; MABE305, Millipore). The membranes were then incubated for 1 h at room temperature with secondary antibody horseradish peroxidase-conjugated anti-rat IgG (1:5000; AP136P, Millipore). After incubation, the blots were imaged on a Bio-Rad ChemiDoc imaging system in order to measure total protein content as a loading control for protein normalization, as previously described [36 (link)]. Membranes were developed with the Clarity Western ECL Substrate (Bio-Rad), chemiluminescent signals were acquired on ChemiDoc MP (Bio-Rad) and band intensities were analyzed using Image Lab software (Bio-Rad).
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