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Dmi600b microscope

Manufactured by Leica
Sourced in Germany

The DMI600B is an inverted microscope designed for a wide range of applications in life science research. It features a modular design that allows for customization to meet specific user needs. The microscope provides high-quality imaging capabilities and is suitable for various observation techniques, including brightfield, phase contrast, and fluorescence microscopy.

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23 protocols using dmi600b microscope

1

Lentiviral Transduction of 3D Hepatocyte Organoids

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At 24 hours prior to transfection, HEK293T cells were plated in 6-well plate at 8 × 105 cells per well
in DMEM (10 % v/v FBS). Cells growing at ~70-80 % confluency were transfected with 1 μg of pLKO.1-puro-CMV-TurboGFP
(Sigma Aldrich) along with 2nd generation lentiviral packaging and envelope plasmids, 0.75 μg of psPAX2 and 0.25
μg of pMD.2g (gifts from D. Trono, Addgene #12260, #12259). At 36 hours post transfection, the media containing lentiviral
particles was collected and passed through a 0.45 μm filter. Polybrene was added to a final concentration of 4
μg/mL. 3D hepatocyte colonies released from matrigel were resuspended in expansion or EGF-induction media in ultra-low
attachment plate for lentiviral infection. The filtered media containing lentivirus was added at a 1:1 (v/v) dilution to target
hepatocyte organoids. A second infection was performed at 60 hours post transfection. GFP expression was visualized at 48 hours
after the first infection. For 2D visualization of hepatocytes, hepatocytes were transitioned to geltrex-coated 2D culture in
expansion media (2 % v/v FBS) at day 5 post second infection, and imaged 2 days later on a Leica DMI 600B microscope.
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2

Quantifying Microglia Response in Neural Grafts

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A series of coronal sections (35 μm; 1:12) was stained for hNCAM and photographed using a Leica DMI600B microscope. The area of the graft core was quantified using ImageJ software (Version 1.50d, National Institues of Health, USA). Data are presented as the sum of all graft areas corrected for series. To estimate the microglia response we took images of three coronal sections stained for Ox42 in which the transplant location was clearly visible from the animals of the CsA-immune-suppressed, the neonatal desensitised and the rejection group (weeks 2 and 6, n = 5). Optical staining intensity was measured using ImageJ software (V1.50d, National Institues of Health, USA) calibrated with an optical density table (NIH) and Rodbard function (Heuer et al., 2012 (link)). We present the O.D. values of the Ox42 staining by subtraction of the intact striatum from the engrafted striatum.
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3

Visualizing Nitric Oxide in mGEnC

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Production of nitric oxide (NO) in mGEnC was visualized using the NO-sensitive dye 4-Amino-5-Methylamino-2’,7’-Difluoroscein (DAF-FM) diacetate. Upon 7 days differentiation under either static condition or under a flow of 5 dyn/cm2, cells were incubated for 60 minutes with 10μM DAF-FM diacetate in phenol red free and FBS free medium at 37°C. Cells were subsequently washed three times with Hank’s balanced salt solution (HBSS, Gibco, Breda, The Netherlands) to remove excess probe and incubated for an additional 45 minutes. Immediately thereafter, fluorescent images were made at a Leica DMI600B microscope.
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4

Quantifying In situ ROS Production

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In situ ROS production was estimated using the oxidation of the dihydroethidium (DHE) probe to fluorescent products (Davel et al., 2012 (link)). Transverse aortic sections (10 μm) obtained with a cryostat were incubated with PBS at 37°C for 10 min. Fresh PBS containing DHE (5 μM) was topically applied to each tissue section, and the slices were incubated in a light-protected humidified chamber at 37°C for 30 min and then a coverslip was added. Negative control sections were treated with the same volume of PBS as the experimental section but without DHE. Images were obtained with a Leica DMI600B microscope equipped for epifluorescence detection using a 20× objective. ImageJ software (NIH-ImageJ, United States) was used for the quantification.
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5

Spinning Disc Confocal Microscopy Imaging

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Images were acquired on a DMI600B microscope (Leica) with an ImagEM EM-CCD Camera (Hamamatsu Photonics, Hamamatsu, Japan) in a spinning disc confocal setup (Yokogawa). Imaging was done using Micro-Manager 1.4 Software (http://www.micro-manager.org). Assembling of frames into a single image was performed in ImageJ.
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6

Immunofluorescence Imaging of Transfected N2A Cells

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N2A cells were plated on top of cover slides in 24-well format and transfected with Lipofectamine 2000 (Invitrogen) according to the manufacturer's instructions. Cells were fixed in 4% PFA 24 h post-transfection and immunostained using primary anti-V5 mouse monoclonal antibody (R960-25 Invitrogen) and secondary Alexa Fluor 488 goat anti-mouse IgG antibody (A-11001 Invitrogen). Cells were mounted on microscope slides using ProLong Diamond antifade with DAPI (P36962 Invitrogen) and imaged using a Leica DMI600B microscope.
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7

Assessing Cell Proliferation and Migration

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The BrdU Assay was performed according to the manufacturer`s protocol (Roche). 1.5x104 cells/96-well plate were seeded in triplicates in supplemented KBM-Gold medium. After 20 h, cells were serum-starved. 24 h later the medium was replaced by supplemented KBM-Gold with 10 μM BrdU. The incorporation of BrdU was detected after 17 h by anti-BrdU-peroxidase labeled antibody. Enzymatic reaction with TMB (tetramethyl-benzidine) was measured after stopping the reaction with 2 N H2SO4 in the Victor II plate reader at 420 nm. For DNA cell cycle analysis, HaCaT pLXSN and HPV8 E6 expressing cells seeded at a cell density of 3x105 in 6-well plates were fixed 4 d later in acetone/methanol for 10 min at -20°C. Cells were treated for 1 h with 1 mg/ml RNase and stained with 5 μg PI per 100 μl cells for 30 min on ice to determine the DNA content by flow cytometry at 488 nm (FACSCanto II, BD Biosciences). The single cell population was gated and cell counts were measured in the PI histogram plot to calculate G0/G1-, S- and G2/M-phases by FACSDiva software 8.0.1 (BD Biosciences). For scratch assay HaCaT monolayers were scratched in 4 cm-dishes. The cells were analyzed at time points 0, 24 and 48 h with Leica DMI600B microscope and Leica application suite software (LAS) V3.06. Cells transfected with p63 siRNA or hsa-miR-203 were scratched 24 h after transfection.
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8

Detecting Vascular Superoxide Levels

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DHE was used to evaluate in situ superoxide generation, as previously described [16 (link),17 (link)]. Nuclear fluorescence captured at 562 nm was quantified using the Image-Pro plus software (MediaCybernetics, Silver Spring, MD, USA) and normalized to cytosolic fluorescence. Aortas were embedded in a freezing medium and transverse sections (10 µm) of frozen arteries were obtained using a cryostat (Company), collected on glass slides, and equilibrated for 10 min in Hanks solution (1.6 mM CaCl2, 1.0 mM MgSO4, 145.0 mM NaCl, 5.0 mM KCl, 0.5 mM NaH2PO4, 10.0 mM dextrose, 10.0 mM HEPES, pH 7.4) at 37 °C. Fresh Hanks solution containing DHE (2 µM) was topically applied to each tissue section and the slices were incubated in a light-protected humidified chamber at 37 °C for 30 min. Negative control sections received the same volume of Hanks solution in the absence of DHE. Images were obtained with a Leica DMI600B microscope. The number of nuclei labeled with 4,6-diamidino-2-phenylindole (Dapi, positive nuclei) along the vascular wall was automatically counted using Image J software.
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9

Live-cell Confocal Microscopy Imaging

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Images were acquired on a DMI600B microscope (Leica, Wetzlar, Germany) with an ImagEM ΕΜ-CCD Camera (Hamamatsu Photonics, Hamamatsu, Japan) in a spinning disc confocal setup (Yokogawa) with a LIVECELL environmental chamber (Pathology Devices, San Diego, CA). Imaging was performed with Micro-Manager 1.4 Software (http://www.micro-manager.org).
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10

HCMV Spread Inhibition Assays

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To determine the effects of RNAi or Arp2/3 inhibition treatments on HCMV
spread through cell monolayers, confluent NHDFs were infected with HCMV TB40/E
at MOI 0.001, treated as described and imaged for GFP-positive virus plaques at
12 days post infection using a 10x dry objective and the Leica DMI600B
microscope described above. The area occupied by individual plaques was
determined using a CellProfiler pipeline and plotted using the matplotlib python
package (code available on GitHub through links provided below). Where plaques
were very small, CellProfiler detection parameters were modified for accurate
detection (code available on GitHub through links provided below). For
single-cycle infection assays, titers were determined by serial dilution of
supernatants collected at 144 h.p.i. from siRNA-treated cells and viral plaques
were enumerated (total number of viral plaques per well of a 12-well tissue
culture dish, averaged over four wells). For inhibitors treatments, NHDFs were
infected and then treated with DMEM containing inhibitors at 4 h.p.i., which was
replaced every 48 h until 120 h.p.i, and DMEM without inhibitors was replaced
prior to supernatant collection at 144h.p.i. for titering.
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