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42 protocols using β actin 8h10d10

1

Western Blot Protein Analysis Protocol

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Cell lysates were prepared using 1× radioimmunoprecipitation assay (RIPA) lysis buffer (Dynebio, Korea), supplemented with a protease inhibitor (Roche, Switzerland), cleared by centrifugation at 12,000 × g, separated by SDS-PAGE, and transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, USA). Primary antibodies were incubated overnight at 4°C in 1× Tris-buffered saline with Tween 20 (TBST) with 5% skim milk or 5% BSA, E7 (8E2, 1:1,000; Abcam, UK), and β-actin (8H10D10, 1:1,000; Cell Signaling Technology, USA).
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2

VEGFR2 Signaling Pathway Activation

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Serum starved HUVEC (∼70–80% confluent) were treated with HKE2 (50–500 nM), VEGF165 (50 ng/ml), or vehicle (ethanol, 0.1% v/v). After 0.5 to 2 h, cell lysates were analyzed by SDS-PAGE followed by Western blot for levels of phosphorylated tyrosine, phosphorylated and total VEGFR2, phosphorylated and total ERK 1/2, Akt, and p38 MAPK, and β-actin. Primary antibodies used were as follows: phospho-tyrosine (P-Tyr-100), phospho-VEGFR2 (Tyr1175) (19A10), VEGFR2 (55B11), phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (20G11), p44/42 MAPK (Erk1/2) (137F5), phospho-Akt (Ser473) (D9E) XP, Akt, phospho-p38 MAPK (Thr180/Tyr182) (D3F9) XP p38 MAPK, β-actin (8H10D10) (all from Cell Signaling Technology), and PTP1B (FG6-1G) (Calbiochem). Membranes were incubated with primary antibody at 4 °C overnight and subsequently incubated with secondary antibody, IRDye 680LT goat anti-rabbit (926-68024) or IRDye 800CW donkey anti-goat (926-32214) (LI-COR Biosciences) (1:10,000 dilution), at room temperature for 1 h. Membranes were scanned by Li-Cor Odyssey Infrared Imaging System. Bands were quantified using ImageJ software. The level of phosphorylated and total protein in each group was expressed as the ratio between phospho-/total-protein. Three or four independent experiments were performed.
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3

Protein Expression Analysis Protocol

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For protein extraction, cells were lysed on ice by RIPA lysis buffer (KeyGEN), and the BCA Kit (KeyGEN) was used to determine the protein concentration. Similar amounts of protein were loaded on SDS–PAGE gels and subjected to electrophoresis, then transferred onto a PVDF membrane and blocked with Tris-buffered saline with 0.1% (vol/vol) Tween 20 (TBST) containing 5% (wt/vol) BSA for 2 hrs. Then, membranes were washed by TBST 3 times and incubated overnight at 4°C with primary antibodies against FAM111B (PA5-58474; Invitrogen), BAG3 (AB47124; Abcam), BCL2 (TA806639S; Origene), β-actin (8H10D10; Cell Signaling Technology) at a 1:1,000 dilution in 5% BSA. After washing by TBST 3 times, PVDF membranes were incubated with the appropriate fluorescent secondary antibody (1:10,000; Odyssey) for 2 hrs at room temperature. Proteins were visualized by Odyssey two-color infrared fluorescence imaging system (LI-COR Company, USA), cropped with Photoshop CS3 (Adobe Systems Incorporated,
San Jose, CA, USA). All experiments were independently repeated at least three times.
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4

Protein Expression Analysis by Western Blot

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Cells were lysed in RIPA buffer and quantified using the Pierce BCA kit (Thermo-Fisher). Proteins lysates (10–35 μg) were resolved on 10% SDS–PAGE gels and transferred to PVDF membrane (Thermo-Fisher). Membranes were blocked in 5% Milk (BioRad) in 1XTBS-T and incubated overnight in primary antibodies diluted in 5% milk at 4 °C. Western blot antibodies for TS (EPR4545) and DPYD (EPR8811) are from Abcam and β-Actin (8H10D10) is from Cell Signaling. After incubation with secondary antibodies (Southern Biotech), detection was performed using the ECL (Thermo-Fisher) and developed on X-Ray film (Thermo-Fisher) using a chemiluminescence imager, AGFA CP100.
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5

DNA Damage Response Protein Analysis

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Western blot was performed as described previously (19 (link), 20 (link)), using pATM (Ser1981) (D6H9), MRE11, RAD50, NBS1, PARP-1, pAKT pCHK2 (Thr68) (C13C1), γH2AX (Cell Signaling, Danvers, MA), and β-Actin (8H10D10) antibodies (Cell Signaling). Appropriate horseradish peroxide-conjugated secondary antibodies (Cell Signaling) were used, and proteins were detected with the Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare Bio-Sciences, Pittsburgh, PA). The blotted membranes were stripped and re-probed with ATM (D2E2), AKT, and CHK2 (D9C6) antibodies (Cell Signaling). Protein bands were captured and quantified by Chemi DocTM MP Imaging System (Bio-Rad).
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6

Synthesis and Characterization of DHA-Based Theranostic Nanoparticles

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DHA, 3-mercaptopropionic acid, N-hydroxysuccinimide (NHS), succinic anhydride, 4-dimethylaminopyridine (DMAP), 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride (EDCI), and dicyclohexylcarbodiimide were purchased from Sigma-Aldrich. DOTA-NH2 was purchased from Confluore Biological Technology Co. Ltd. Fer-1 and DOX hydrochloride were purchased from MedChemExpress. CDDP and DFO were purchased from Energy Chemical. Anti–4-HNE (bs-6313R) was purchased from Bioss. Anti-GPX4 (ab125066) was purchased from Abcam. Anti-TfR1 (BA0462) was purchased from Boster. Anti–FTH-1 (no. 3998) was purchased from Cell Signaling Technology. Slc40A1 (Fpn, AB-23233-A) was purchased from Alpha Diagnostics. β-Actin (8H10D10) was purchased from Cell Signaling Technology. FerroOrange was purchased from Maokang Biotechnology. The creatinine assay kit and BUN assay kit were purchased from Ponstar Biotech Co. Ltd.
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7

Quantifying Phosphorylated Signaling Proteins

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Proteins were extracted by lysed tumor cells using RIPA lysis and extraction buffer (Thermo Fisher Scientific). The western blot analysis was used to determine the expression of total and phosphorated proteins. The intensity of protein bands was detected using ECL Plus (GE Healthcare Life Sciences) using the ChemiDoc Imaging System (Bio-Rad). The antibodies targeting Phospho-IκBα (Ser32) (clone 14D4, #9246), IκBα (clone 44D4, #4812), Phospho-RELA (Ser536, #3033), RELA (clone D14E12, #8242) and β-actin (8H10D10, #3700) were purchased from the Cell Signaling Technology and used for western blot analysis.
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8

Innate Immune Response to Burkholderia

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24 hours prior to infection, hMDMs were seeded in 6 well-plates (6.5×105 cells per well), and infected for 30 min with B. pseudomallei wild type or the corresponding ΔbsaL mutant at the indicated MOI. Proteins of hMDMs were prepared by TRIzol Reagent (ThermoFisher, Austria) according to the manufacturer's instructions. Protein content was determined using the Bradford method. Equal amounts of protein were separated by SDS-PAGE and transferred to PVDF membranes. As a loading control, all blots were probed with anti–β-actin (8H10D10, Cell Signaling). Primary antibodies against human caspase-1 (PA517570, Invitrogen), IL-1β (8516, R&D Systems), β-actin (8H10D10, Cell Signaling) and gasdermin D (NBP2-33422, Novus Biologicals) and anti-rabbit IgG (Cell Signaling) or anti-mouse IgG (Cell Signaling) HRP-conjugated secondary antibody were used. For detection, Clarity Western ECL Substrate (BioRad, Austria) was used as the HRP substrate.
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9

Western Blot Analysis of Osteogenic Markers

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Western blot analysis was performed as previously described [57 (link)]. The primary antibodies were as follows: RUNX2 (D1L7F) Rabbit mAb #12556(1:1000), APC Antibody #2504(1:1000), β-Catenin (D10A8) XP® Rabbit mAb #8480(1:1000), Cyclin D1 (92G2) Rabbit mAb #2978(1:1000), c-Myc (E5Q6W) Rabbit mAb #18583(1:1000), β-actin (8H10D10) Mouse mAb #3700(1:1000) (All from Cell Signaling Technology, Danvers, MA, USA), anti-ALP (ab83259) (1:1000), anti-osteocalcin (OCN) (ab133612) (1:1000), anti- Osterix (OSX) (ab209484) (1:1000) (All from Abcam, Cambridge, MA, USA). β-actin served as an internal control. Western blot analysis was quantified using ImageJ software (http://rsb.info.nih.gov/ij/) and the signal of each target band was normalized to that of the β-actin band.
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10

Western Blot Analysis of STAT6 and STAT3

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Whole cell lysates were prepared by lysing cells in RIPA buffer (50mM Tris pH7.5, 150mM NaCl, 1% NP-40, 0.5% EDTA, 0.1% SDS) supplemented with 2x Halt protease inhibitor (Pierce, Rockford, IL). Protein was separated by SDS-PAGE on a 10% polyacrylamide gel and transferred to nitrocellulose membrane. Protein concentration was determined using BCA assay (Pierce, Rockford, IL, USA). 40–75ug of protein was used per lane. Antibodies to proteins of interest STAT6 (D3H4), phospho-STAT6 pY641 (D859Y), STAT3 (124H6) and β-actin (8H10D10) (Cell Signaling, Danvers, MA) were used in western blots. Signals were developed with enhanced chemiluminescence (ECL) (Pierce, Rockford, IL). Analysis was performed on the ChemiDoc XRS+ system using Image Lab (Bio-Rad Laboratories, Hercules, CA) or ImageJ (U.S. National Institutes of Health, Bethesda, MD) software.
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