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45 protocols using trichrome stain kit

1

Histological and Immunohistochemical Evaluation of Tumor Samples

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The histological observation was performed by staining with hematoxylin/eosin (H&E), Giemsa, and trichrome stains using paraffin sections. For H&E staining, paraffin-embedded sample slides were de-paraffinized, hydrated, and then stained with hematoxylin for 1 min. After rinse, the slides were stained with eosin for 5 min, rinsed, and sealed with cover slips. Tissue sections from tumor mass, kidneys, spleen, liver, heart, and lungs were used. The slides were counterstained with hematoxylin and mounted. To determine the effect of CPT on expression of Ki67, PCNA, Caspase-3, Caspase-8, Caspase-9, Bcl-2, Bax, Bid, Bad, Drp1, Opa1, Mfn1, and Mfn2 by immunohistochemistry, the slides were blocked in 5% bovine serum for 15 min, followed by incubation with the primary antibody at 4 °C overnight in a moist chamber. The sections were then incubated with the corresponding secondary antibodies. The antigen-antibody complex was detected by Dako Liquid DAB + Substrate-Chromogen System (Dako, Carpinteria, CA). All slides were examined under light microscopy. Giemsa stain and trichrome stain were performed according to the manufacturer’s instruction of Giemsa Stain Kit (ab150670) and Trichrome Stain Kit (ab150686) from Abcam (UK). All slides were examined under light microscopy.
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2

Streptozotocin-Induced Diabetic Model: Antioxidant and Anti-inflammatory Evaluation

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The diabetes inducing drug, Streptozotocin was purchased from Abcam (ab 142155, Cambridge, UK), 6-gingerol (G1045) was purchased Sigma Aldrich, St. Louis, MO, USA. Antioxidant enzymes like superoxide dismutase (SOD) (ab 65354), Glutathione-S-transferase (GST) (ab 65326), catalase (CAT) (ab 83464) and Trichrome Stain Kit (Connective Tissue Stain) (ab150686) were bought from Abcam, Cambridge, UK. ELISA kits for the assay of inflammation by C-reactive protein (ab 108827), TNF-α (ab 46070), IL-1β (ab 100768), and IL-6 (ab 100772) were procured from Abcam, Cambridge, UK. Primary antibodies (TNF-α) and Goat Anti-Mouse IgG H&L (HRP) (abcam, Cambridge, UK) used in this study were purchased from Abcam, Cambridge, UK. All supplementary chemicals used in this study were of high purity grade obtained from commercial sources.
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3

Histological and Immunohistochemical Analysis of Lung Tissue

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The lung tissues were fixed in 10% formalin and embedded in paraffin, and then were cut at 4 μm thickness for preparation of serial section slides. Tissue sections were stained with hematoxylin & eosin (H&E) for histological examination or subjected to immunohistochemical analysis with each of the indicated primary antibodies according to standard techniques. Three independent visual fields were examined for quantitative analysis using ImageJ 1.50e with an IHC Toolbox plugin according to the instructions (https://imagej.nih.gov/ij/plugins/ihc-toolbox/index.html). Trichrome Stain Kit (Abcam) was used for Masson’s trichrome stain in line with the manufacturer’s protocols. For analysis of calcium deposits, tissue sections were subjected to Von Kossa stain using Von Kossa Stain Kit (Abcam) according to manufacturer’s instructions. The histological and immunohistochemical analysis were performed by two trained technologists and verified by a pathologist.
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4

Histological Assessment of Lung Pathology

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Paraffin-embedded tissue sections (5 μm thick) were stained with haematoxylin and eosin Y (H & E) for general histological assessment of pathological changes. Collagen deposition in the lung parenchyma was measured by staining the paraffin sections with Masson's trichrome stain (trichrome stain kit, Abcam (ab150686)) according to the manufacturer's instructions.
Morphological changes in the lung tissue sections were assessed semiquantitatively and quantitatively as follows.
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5

Brain, Testis, and Muscle Morphology Assessment

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For the assessment of brain morphology and cAMP activation in testis, rats were transcardially perfused with 4% paraformaldehyde in phosphate-buffered saline (pH 7.4), followed by overnight post-fixation of the brains in the same fixative. For immunohistochemistry, rat brains were embedded in one gelatin block, and 40-μm coronal sections were freeze-cut and collected into 24 series (NeuroScience Associates, Knoxville, TN, USA). One of these series (containing 1 every 24 sections) was used for morphological analysis with anti-NeuN antibody (1:300, MAB377, Merck). Free-floating staining was performed as previously described [23 (link)]. Testes were collected and fixed as previously described [45 (link)]. Paraffin sections were stained with anti-cAMP (ab134902, abcam) at a dilution of 1:1000 and secondary goat anti-rabbit antibody (1:1000, BA-1000, Vector Laboratories). For muscle staining, rat gastrocnemii were rapidly frozen in liquid nitrogen directly after dissection, then stored at −80 °C till sectioning. Cross-sections with 8-µm thickness were stained using a Trichrome Stain Kit (ab150686, Abcam).
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6

Liver Fibrosis Progression Quantified by Trichrome Staining

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The liver samples were isolated from the liver fibrosis mice sacrificed on day 0, 30 and 45 upon injection with CCl4 and then fixed in 4% paraformaldehyde and embedded in paraffin, followed by frozen section. For the Masson’s trichrome staining of the liver sections, Trichrome Stain Kit (Abcam, Catalog#ab150686) was used. Briefly, the sections were firstly deparaffinized and rehydrated in distilled water. Then, the sections were incubated successively with preheated Bouin's Fluid, Weigert's Iron Hematoxylin, Biebrich Scarlet/Acid Fuchsin solution, phosphomolybdic/phosphotungstic acid solution, Aniline Blue solution and acetic acid solution, with rinse steps at the interval of every two incubation steps. The duration of each incubation step was controlled according to the recommendatory procedures of the manual. The stained sections were then carefully observed and photographed under microscope (Olympus). The proportion of each staining area was analyzed by ImageJ software. The blue staining area represents the collagen-enriched tissues, which was considered as the fibrosis area of the livers.
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7

Atherosclerosis Assessment in Bone Marrow Transplant Mice

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To perform BMT, lethally irradiated bone marrow cells obtained from eight-to-nine-week-old SENP2 S344A KI or WT mice were replaced with bone marrow cells obtained from WT mice (47 (link)). Following a recovery period of 6 weeks, the recipient mice were administered a single dose of rAAV8-mPCSK9 and were fed a HFD for 22 weeks (45 (link)). To confirm the successful completion of the BMT, PCR was conducted on genomic DNA extracted from peripheral blood of the recipient mice, using specific primers for WT (forward: CAC GTA TTC ACT ACC CAA TGT GGA GTT C; reverse: AAG TTC TTT TCC TTT ATC TCA AGC ACT GA) and SENP2 S344A KI (forward: CAC GTA TTC ACT ACC CAA TGT GGA GTT C, reverse: GTT CTT TTC CTT AAT CTC AAG CAC TGC). Lipid-laden lesions in the mouse aortas were identified through Oil Red O staining of en-face preparations. The aortic valve leaflets, sectioned at the center area between the free edge and attachment site at the annulus, were stained using Trichrome Stain Kit (ab150686; abcam). Histological evaluation was performed to assess the changes in the aortic valves of the BMT recipients.
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8

Cranial Bone Histology Analysis

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Immediately after micro-CT scanning, the specimens (n = 6 per group) were decalcified in 10 % EDTA solution for 4 weeks and embedded in optimal cutting temperature (OCT; Fisher HealthCare, Waltham, MA). Thin sections (5 μm) were cut by a rotary cryostat (HM525 NX; Thermo Fisher Scientific, Waltham, MA) from the sagittal suture of each cranial bone in the sagittal plane. After washing, the slides were stained with hematoxylin and eosin (H & E; Sigma-Aldrich, St Louis, MA) and Trichrome stain kit (Abcam, Cambridge, MA) for observation under microscope. The expressions of osteocalcin (OCN) and osteopontin (OPN) in the defect sites were measured by immunohistochemistry. The slides (n = 6) were incubated with primary antibodies against OCN (1:100; Santa Cruz, CA) or OPN (1:100; Santa Cruz, CA) and subsequently with horseradish peroxidase (HRP)-conjugated secondary antibody (1:200; Santa Cruz, CA). Primary antibody was replaced with blocking solution in the negative controls. The sections were examined under light microscopy. ImageJ (NIH) was introduced to analyze the OCN- or OPN-positive area in the defect sites.
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9

Trichrome Staining of Lung Sections

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Lung sections were fixed in 4% paraformaldehyde for 10 min, embedded in paraffin, and cut into 3 µm thick sections. These sections were stained using the Trichrome Stain Kit (#ab150686, Abcam, Cambridge, UK) according to the manufacturer’s instructions.
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10

Histological Analysis of Murine Cardiac Tissue

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Mouse hearts collected from 2- and 10-week-old animals were rinsed thoroughly in PBS to remove excess blood and fixed in 10% formalin for at least 24 h. After the fixation process, they were washed twice in PBS and stored in 70% ethanol before paraffin embedding. Paraffin-embedded myocardia were cut into 5-μm-thick sections and mounted on clear Plus microscope slides. For histological analysis, sections were stained for haematoxylin and eosin with automated Leica autostainer XL system (Leica Biosystems, UK) and trichrome stain kit (Ab150686, Abcam, UK) to detect cardiac fibrosis (according to the manufacturer’s instructions).
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