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13 protocols using slp 76

1

Signaling Pathways in Immune Cell Activation

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Concanavalin A, actinomycin D and XTT (2,3-Bis(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide inner salt) were obtained from Sigma-Aldrich; mouse or human TNF-α was from PeproTech; α-galactosyl ceramide (α-GalCer; KRN7000) was from Enzo Life Science; R788 was from Cayman Chemical.
Antibodies to IκBα, p-ERK, p-JNK, p-p38 (T180Y182), p-MKK3/6, p-MKK4, SYK, PLCγ1, Vav-1, SLP-76, PKCθ, cleaved caspase 3, caspase 9, and cleaved caspase 9 were purchased from Cell Signaling Technology; anti-p-p38 (Y323) was from ThermoFisher Scientific; anti-GAPDH Ab was from Chemicon; Abs to mouse CD3, CD28, and Zap70 were from Biolegend; anti-CD3-FITC, anti-CD4-PE, anti-NK 1.1-PE, and anti-CD69-PerCP Abs, and Annexin V-FITC apoptosis detection kit were from eBioscience; anti-Gadd45α Ab was from Santa Cruz Biotechnology.
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2

Western Blot Protein Analysis

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Western blots were performed using standard methods using a Reinhard lysis buffer supplemented with protease and phosphatase inhibitors (Roche, Basel, Switzerland). For phosphorylation studies, BaF3 and 32D cells were depleted of IL-3 for 15 h. Proteins were blotted on a nitrocellulose membrane. Primary antibodies were used at 1:1000 in 1% milk over night at 4 °C against phosphorylated and non-phosphorylated STAT1 (pY701), STAT3 (pY705 and pS727), STAT5 (pY694), STAT6 (pY641), JAK2, PLCγ1 (pY783), PLCγ2 (pY759), SLP76, ERK (T202/Y204), AKT (S473), SYK, ITK (all Cell Signaling, Danvers, MA, USA), JAK2, TEL (Santa Cruz Biotech, Dallas, TX, USA), SLP76 (pY128) (BD Pharmingen), and β-Actin (Sigma-Aldrich). Secondary HRP-labeled antibodies (Cell Signaling Technology) were used at 1:2500. Membranes were incubated with ECL (Amersham, London, UK) for 2 min and chemiluminescence was detected using a western blot detection system (Curix 60, AGFA).
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3

Western Blot Protein Analysis Protocol

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Cells were harvested by centrifugation at 120 g for 5 minutes in a microfuge. The pellets were washed with PBS and lysed with mammalian protein extraction reagent (Pierce) with protease and phosphatase inhibitors (Sigma). The lysates were frozen at −80°C overnight and defrosted on ice, then cleared by centrifugation at 16 060 g for 10 minutes at 4°C. The supernatants were collected, and protein concentrations were determined with the Pierce BCA Protein Assay (Thermo Fisher Scientific). Equal amounts of total protein lysates (30 μg) were resolved by SDS‐PAGE, electrotransferred onto PVDF membranes, probed with antibodies, and detected with ECL reagent (GE Healthcare). The antibodies used for western blots are as follows: IRF‐1 was from BD Biosciences (San Jose, CA); GAPDH, c‐Raf, Lyn, Fgr, p47phox, Slp‐76, Vav1, PU.1, horseradish peroxidase anti‐mouse, and anti‐rabbit antibodies were from Cell Signaling (Danvers, MA); and c‐Cbl was from Santa Cruz Biotechnology (Santa Cruz, CA). The relative intensity of specific band was calculated against GAPDH using ImageJ software.
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4

Western Blot Analysis of Cell Signaling

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The western blots were performed as previously described [35 (link)]. The antibodies used for western blots: anti- CD38 was from BD Biosciences (San Jose, CA), GAPDH, c-Raf, Phospho-c-Raf (S259), Mek, p-Mek, Erk, p-Erk, FAK, Lyn, Fgr, p47phox, Slp-76, Vav1, pY416-c-Src, horseradish peroxidase anti-mouse, and anti-rabbit antibodies, were from Cell Signaling (Danvers, MA), p-Tyr and c-Cbl antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA), Phospho-c-Raf (S621) was from Thermo Fisher Scientific (Waltham, MA).
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5

Immunoblotting of signaling proteins

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2×107 cells were lysed using 350–400 µL lysis buffer (Pierce, Rockford, IL) supplemented with protease and phosphatase inhibitors (Sigma, St. Louis, MO), and lysates were cleared by centrifugation at 13,000 rpm for 30 min at 4°C. Equal amounts of total protein lysates (15 µg) were resolved by SDS-PAGE, transferred onto PVDF membranes and probed with antibodies. c-Cbl (C-15) antibody was from Santa Cruz Biotechnology (Santa Cruz, CA). pS621c-Raf antibody was from Pierce Thermo Scientific (Lafayette, CO). Lyn, Fgr, pY416-SFK, AhR, Vav1, Slp76, p47phox, c-Raf, pS259c-Raf, pS289/296/301c-Raf, VDR, RARα, GAPDH, horseradish peroxidase anti-mouse and horseradish peroxidase anti-rabbit were from Cell Signaling (Danvers, MA, USA). Enhanced chemiluminescence ECL reagent (GE Healthcare, Pittsburg, PA) was used for detection.
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6

Analysis of CD4+ T Cell Signaling

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Purified CD4+ CD27/CD28 subsets were harvested ex vivo immediately after separation. Alternatively, purified human highly differentiated CD4+ CD27 CD28 T cells were harvested four days post transduction (see below). Lysates from 2 × 106 cells were obtained and analyzed as previously described33 . Membranes were probed with anti-p38, MKK3, MKK6, phospho-MKK3/6 (Ser189/Ser207; 22A8), Lck, Zap70 (99F2), TAB1 (C25E9), TAK1, TRAF6 (D21G3), phospho-AMPKα (Thr172), AMPKα, phospho-γH2A-x (Ser139), Lat, SLP-76, PLC-γ 1, GAPDH (14C10) all from Cell Signalling. Anti-phospho-p38 (Tyr323) was from ECM-Biosciences. hTERT (H-231) and DLG1 (SAP-97, 2D11) antibodies were from Santa Cruz Biotechnology. All immunoblots were developed using the ECL Prime Western Blotting Detection Kit (GE Healthcare), according to the manufacturer’s instructions.
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7

Analysis of CD4+ T Cell Signaling

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Purified CD4+ CD27/CD28 subsets were harvested ex vivo immediately after separation. Alternatively, purified human highly differentiated CD4+ CD27 CD28 T cells were harvested four days post transduction (see below). Lysates from 2 × 106 cells were obtained and analyzed as previously described33 . Membranes were probed with anti-p38, MKK3, MKK6, phospho-MKK3/6 (Ser189/Ser207; 22A8), Lck, Zap70 (99F2), TAB1 (C25E9), TAK1, TRAF6 (D21G3), phospho-AMPKα (Thr172), AMPKα, phospho-γH2A-x (Ser139), Lat, SLP-76, PLC-γ 1, GAPDH (14C10) all from Cell Signalling. Anti-phospho-p38 (Tyr323) was from ECM-Biosciences. hTERT (H-231) and DLG1 (SAP-97, 2D11) antibodies were from Santa Cruz Biotechnology. All immunoblots were developed using the ECL Prime Western Blotting Detection Kit (GE Healthcare), according to the manufacturer’s instructions.
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8

Flow Cytometric Analysis of Immune Cells

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Antibodies for flow cytometric analysis, PE-conjugated CD38 (clone HIT2) and APC-conjugated CD11b (clone ICRF44) conjugated with allophycocyanin (APC), were from BD Biosciences (San Jose, CA, USA). SLP-76, Lyn, Fgr, Vav1, p-tyr, HRP anti-mouse and anti-rabbit antibodies were purchased from Cell Signaling Technologies (Danvers, MA, USA). Anti-c-Cbl (clone C-15, catalogue number sc-170, lot H0414) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). NUMB Antibody catalogue number (703078) was from Thermo Fisher Scientific (Waltham, MA, USA). The c-Raf antibody were from BD Biosciences (San Jose, CA, USA). Protease and phosphatase inhibitors were purchased from Sigma (St. Louis, MO, USA). Protein G magnetic beads used for immunoprecipitation were from Millipore (Billerica, MA, USA).
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9

Immunoprecipitation and Western Blotting

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Protein A/G beads used for immunoprecipitation, rabbit anti-c-Cbl, rabbit anti-Vav1, and p-Tyr antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA). PureProteome Protein G Magnetic Beads were from Millipore (Billerica, MA). Antibodies for GAPDH, beta-actin, p-Erk1/2, ERK1/2 (rabbit), pan-SFK416, Lyn, Fgr, Lck, Fyn, Vav1, SLP-76, pY-p55/p85 PI3K, total p85 PI3K, HRP anti-mouse, and HRP anti-rabbit were from Cell Signaling (Danvers, MA). CD38 antibody was purchased from BD Pharmingen (San Jose, CA). M-PER Mammalian Protein Extraction Reagent lysis buffer was from Pierce (Rockford, IL). Propidium iodide, protease and phosphatase inhibitors, and DMSO were purchased from Sigma (St. Louis, MO).
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10

Immunophenotyping of T Cell Subsets

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Antibodies were from BD Biosciences unless otherwise mentioned. Anti-human PD-1 was from Affymetrix. Goat anti-human IgG and goat anti-mouse IgG were from Jackson ImmunoResearch. Anti-PC-FITC (clone Vs38c) was from Dako. SLP-76 from Cell Signaling Technology. p-SLP76 (Ser376) and anti-PD-L1 antibodies were generated at Genentech.
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