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α sma cy3

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α-SMA-Cy3 is a fluorescently labeled antibody that specifically binds to alpha-smooth muscle actin (α-SMA), a cytoskeletal protein commonly used as a marker for myofibroblasts and vascular smooth muscle cells. The Cy3 fluorescent dye is conjugated to the antibody, allowing for the visualization and detection of α-SMA-expressing cells in various experimental and analytical applications.

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18 protocols using α sma cy3

1

Immunofluorescence Staining of Aortic Rings

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The rat and mouse aortic rings were respectively cultured for 1 and 2 weeks before the staining. The rings were washed with PBS, fixed in 4% formaldehyde for 20 minutes. The wells were then washed once in PBS and the rings were permeabilized with 0.5% Triton X-100 in PBS for 30 minutes, before being washed twice in PBS. 100μl of BS-1 Lectin FITC (1 mg/ml; Sigma, cat. no. L9381/L5264) (1:200), anti-actin, α-SMA Cy3 (Sigma, cat. no. C6198) (1:500) or anti-NG2 (Millipore, ab5320) (1:200) was added and incubated overnight at 4°C. For IL-6Rα staining on aortic rings, 100μl of the unconjugated (1:200) IL-6Rα antibody was left overnight at 4°C. The following day the rings were washed with PBS and incubated with goat anti-rabbit Alexa 488 antibody (Life Technologies, A-11034) for 2 hours at room temperature. The plates were washed twice in PBS and the rings were removed from the 96 well plate, using a syringe needle, placed on a microscope slide and mounted with Prolong Gold DAPI containing medium (Invitrogen, cat. no. P36931). The slides were left to dry and imaged using confocal microscopy (Zeiss LSM 510 META).
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2

Molecular Mechanisms of Cdh1, Cdc20, and APC in Cell Cycle Regulation

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The SIRT1 and AROS constructs used in this study were previously described32 (link). Full-length Cdh1, Cdc20, APC2, and APC11 were amplified via polymerase chain reaction (PCR) and subcloned into the plasmids Flag, Myc-tagged pcDNA3 (Thermo Fisher Scientific), pEGFP-C3 (BD Biosciences) and pGEX4T-1 (GE Healthcare). The antibodies used included the following: SIRT1 (Santa Cruz Biotechnology, sc15404), AROS (Santa Cruz Biotechnology, sc-86209; Abcam, ab201091), Cdh1 (Abcam, ab3242), Cdc20 (Santa Cruz Biotechnology, sc13162), Cyclin B1 (Santa Cruz Biotechnology, sc245), APC2 (Thermo Fisher Scientific, RB-067), APC11 (Abcam, ab154546), p53 (Santa Cruz Biotechnology, sc-126), p21 (Santa Cruz Biotechnology, sc-6246), p16 (Calbiochem, NA29), green fluorescent protein (GFP; Santa Cruz Biotechnology, sc-8334), polyubiquitinated conjugates (poly-Ub; Enzo Life Science, BML-PW8805-0500), acetylated-lysine (Cell Signaling Technology, 9814), hemagglutinin (HA; Merck Millipore, 05-904), Myc (Merck Millipore, 05-724), Flag M2 (Sigma‒Aldrich, F1804), LSD1 (Abcam, ab17721), H3K9me2 (Abcam, ab1120), H3K9ac (Abcam, ab12179), α-SMA-Cy3 (Sigma, C6198), collagen type I (Abcam, ab34710), elastin (Abcam, ab21600), fibronectin (Abcam, ab2413), and β-actin (Santa Cruz Biotechnology, sc47778).
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3

Quantification of Pulmonary Arteriole Muscularization

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Lungs were isolated, flushed with PBS, inflated and embedded with optimal cutting temperature compound, flash frozen in liquid nitrogen, and sectioned. Prior to staining lung sections were fixed in a solution of 4% paraformaldehyde (Electron Microscopy Sciences) and 0.01% Triton in PBS. Sections were stained with FITC conjugated rat anti-mouse CD31 (CD31-FITC, BD Biosciences, catalog #558738), Cy3 conjugated mouse monoclonal anti- α smooth muscle actin (αSMA-Cy3, Sigma-Aldrich, SKU C6198), and DAPI (Thermo Fisher Scientific). Lung sections from Tie2-Cre/YFPfl/- transplanted animals were also stained with AF647 conjugated anti-GFP (GFP-AF647, Thermo Fisher Scientific, catalog #A-31852). Control specimens included unstained slides. Slides were labeled only with randomized animal identification number and data acquisition was performed without knowledge of the treatment group. The number of fully (>75% of vessel circumference) and partially muscularized αSMA-positive pulmonary arterioles (<100 μm diameter) were quantified from images taken using an Olympus microscope. In lung sections taken from Tie2-Cre/YFPfl/- transplanted animals, pulmonary arterioles were further evaluated for the presence of cells expressing both YFP and CD31, identified as PACs (negative controls shown in Online Figure I).
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4

Immunofluorescence Staining of Nervous System

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The following antibodies were used: GFP (1:500, Life Technologies, A10262 or A11122); Nefh (1:1,000, Aves laboratory, NFH or 1:1,000, Abcam, ab8135); CGRP (1:500, Abcam, ab43873); NeuN (1:500, Millipore, MAB377); PECAM1 (1:100, Abcam, ab28364); PV (1:500, Swant, PV 2); α-bungarotoxin (1:500, Life Technologies, B13423); advillin (1:500, Abcam, ab72210); Tuj1 (1:500, Covance, MMS-435P-250); αSMA–Cy3 (1:200, Sigma, C6198); E-cadherin (1:500, Life Technologies, 13–1900); MUC-1 (1:500, Fisher Scientific, HM1630P0); T1α (1:50, DSHB, 8.1.1); proSP-C (1:300, Millipore, AB3786); ChAT (1:300, Millipore, AB143); Piezo2 (1:1,000)21 (link); IB4-Alexa Fluor568 conjugate (1:200, Life Technologies, I21412).
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5

Immunocytochemistry of Lung Fibroblasts

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Human lung fibroblasts to be subjected to ICC were cultured on eight‐well glass chamber slides. Cells were fixed with ice‐cold methanol/acetone (1:1) for 30 min, washed three times for 5 min with PBS and blocked for 1 h with blocking buffer (5% BSA, 0.5% goat serum, 0.2% Triton‐X in PBS), and incubated over night with one of the following antibodies: Col1a (1:100, Median life science, T40777R), FoxO3 (1:100, cell signalling, 2497), and α‐SMACy3 (1:200 Sigma Aldrich, C6198). This was followed by 1‐h incubation with secondary antibody Alexa Fluor®‐488 (1:1,000, Life Technologies, A11008) except for the cells that were probed with α‐SMA. TOPO3 was used for nuclear counter stain. Fluorescent images were taken with LSM 710 confocal microscope.
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6

Histological and Immunofluorescent Analysis of Liver Fibrosis

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Formalin-fixed samples were embedded in paraffin, cut in 5 μm thick sections, and stained with Sirius red. Slides were evaluated by a blinded expert UCSF liver pathologist (AM) for lobular inflammation. The collagen proportional area (CPA) was morphometrically quantified on Sirius red-stained sections with image processing software (Image J, NIH)5 (link).
For immunofluorescence, PFA fixed samples were embedded in optimal cutting temperature (OCT) and sectioned as previously described5 (link). The samples were blocked with 0.1% Triton-100x (BioRad), 10% Donkey Serum (Jackson ImmunoResearch), and 3% bovine serum albumin (BSA) in tris-buffered saline (TBS) and tween 20 (TBST). Samples were incubated with YAP (1:100, 14074T, Cell Signaling) overnight at 4 °C. The following day, after three washes with PBS, the samples were incubated with DAPI (2 μg/mL, D1306, ThermoFisher Scientific), Alexa 488 (1:200, ab150073, Abcam), and αSMA-Cy3 (1:200, C6198, Sigma Aldrich) at RT for 1 h. Slides were imaged on the Zeiss LSM 780 confocal microscope at 63 × magnification. In each experiment, laser intensity, background level, contrast, and electronic zoom size were collected at the same level.
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7

Immunohistochemical Analysis of Tissue Sections

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BCA sections were deparaffinized and rehydrated in xylene and ethanol series. After antigen retrieval (H-3300-250, Vector Laboratories), sections were blocked with fish skin gelatin–PBS (6 g/L) containing 10% horse serum for 1 hour at room temperature. Slides were incubated with the following antibodies: mouse monoclonal α-SMA–Cy3 (4.4 μg/mL, clone 1A4, C6198, Sigma-Aldrich), goat polyclonal anti-GFP (4 μg/mL, ab6673, Abcam) for detection of eYFP, and rabbit polyclonal p21 (18 μg/mL, 10355-1-AP, Proteintech). TUNEL (30074, Bioutium) was used for staining. The secondary antibodies donkey anti-goat AF-488 (Invitrogen, A11055) conjugated to Alexa 488 (5 μg/mL) and donkey anti-rabbit conjugated to Alexa 647 (A31573, 5 μg/mL) were used (Thermo Fisher Scientific), and DAPI (0.05 mg/mL, D3571) was used as a nuclear counterstain; slides were mounted using Prolong Gold Antifade (P36930), purchased from Thermo Fisher Scientific.
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8

Kidney Tissue Immunofluorescence Staining

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Mouse tissues were prepared and stained as described previously30 (link). Briefly, kidneys were fixed in PLP solution for 2 hours and washed in 18% sucrose solution overnight prior to cryopreservation and cryosectioning (to a thickness of 7 μm). For antigen detection by fluorescence, primary antibodies against the following proteins were used for immunolabeling: GFP-FITC (1:200, Abcam), α-SMA-Cy3 (1:200, clone 1A4, Sigma-Aldrich), F4/80 (1:200, Thermo Fisher), and 8-OHdG (1:50, Japan Institute for the Control of Aging). Primary antibodies were detected with fluorescence-conjugated, affinity-purified secondary antibody labeling (1:1000, Thermo Fisher). Samples were co-labeled with DAPI and mounted with ProLong Diamond (Thermo Fisher). Fluorescence images were captured using a BZ-X710 microscope (Keyence).
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9

Imaging Analysis of Iba-1 and αSMA Proteins

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Immunofluorescence and immunohistochemical analysis of Iba-1 and αSMA were performed using monoclonal antibodies against Iba-1 (Wako) and αSMA-Cy3 (Sigma, St. Louis, MO). For immunofluorescence, after blocking with 5% normal goat or normal chicken serum (Jackson Immunoresearch, West Grove, PA) in PBST (0.3% Triton) for 1 h at room temperature (RT), the sections were treated with Iba-1 and αSMA primary antibodies overnight at 4°C. After 3 rinses with PBST, sections were incubated for 1 hour at RT with FITC-conjugated goat anti-rabbit secondary antibodies (1:500). After three rinses with PBST, the samples were counterstained with DAPI (1:10,000, Roche) (5 min at RT). The samples were washed with PBST once and mounted with the ProLong Gold anti-fade reagent (Invitrogen) in the dark. Fluorescent signals were visualized and digital images were obtained using the Zeiss LSM-700 confocal microscope (Carl Zeiss, Oberkochen, Germany). For IHC, after blocking with 5% goat serum in PBST for 1 hour at room temperature, the sections were treated with the Iba-1 and αSMA antibodies overnight at 4°C, then the peroxidase-conjugated streptavidin complex method was performed, followed by the 3, 3′ diaminobenzidine (DAB) procedure according to manufacturer's protocols (VECTASTAIN Elite ABC Kit, Vector Lab, Burlingame, CA).
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10

Comprehensive Immune Cell Profiling

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The following antibodies/dies (purchased from BioLegend unless otherwise stated) were used for flow cytometry: CD45-PE-Cy7, CD31-FITC, FAP-biotin (R&D system), streptavidin-APC, CD90-BV605, PDPN-APC, Ly6C-AF700, CD26-PerCP-Cy5.5 (eBioscience), αSMA-Cy3 (Sigma), CD11b-PE-Cy7, CD11b-Pacific Blue, F4/80-APC, F4/80-FITC, MR-PE, MR-PE-Cy7, Ly6C-PerCP-Cy5.5, Ly6G-APC-Cy7, Arg1-PE (R&D system), PDL1-APC (BD Biosciences), CD45-FITC, CD3-AF700, CD4-BV421, CD8-BV605 (BD Biosciences), CD25-PE-Cy7, FoxP3-APC and carboxyfluorescein succinimidyl ester (CFSE, Sigma Aldrich). Viability was assessed with Zombie Aqua (BioLegend). Samples were Fc receptor-blocked using mouse FcR blocking reagent (1:10; Miltinyi Biotec). For intracellular staining, samples were fixated and permeabilized with eBioscience Fixation/Permeabilization Concentrate, Diluent and 10X Buffer (Invitrogen). Data were acquired on FACSCanto II (BD Biosciences) or ACEA NovoCyte Quanteon (Agilent) and analyzed with FlowJo V.10.6.1 (Tree Star). Gating strategies can be found in online supplemental figures 8–13.
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