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22 protocols using chicken egg lysozyme

1

Fluorogenic Enzyme Substrate Evaluation

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Polyethylene glycol (PEG) 1000 (MW 1,000), cytochrome C (horse heart) (MW 12,384), myoglobin (horse skeletal muscle) (MW 17,800) and lysozyme (chicken egg) (MW 13,680) were purchased from Sigma (St. Louis, MO, USA). Dibasic potassium phosphate was obtained from Wako Pure Chemicals (Osaka, Japan).
4-Methylumbelliferyl sugar derivatives used as test samples were purchased as follows: 4-Methylumbelliferyl-α-L-fucopyranoside (α-L-Fuc), 4-methylumbelliferyl-β-D-fucopyranoside (β-D-Fuc), 4-methylumbelliferyl-β-D-glucopyranoside (Glc), 4-methylumbelliferyl-β-D-galactopyranoside (Gal) and 4-methylumbelliferyl-β-D-cellobioside (Cel) were purchased from BIOSYNTH AG (Staad, Switzerland). 4-Methylumbelliferyl-α-D-mannopyransoide (Man) was obtained from Wako Pure Chemicals.
All other reagents were of reagent grade.
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2

Protein Purification and Characterization

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Polyethylene glycol (PEG) 1000 (MW 1000), cytochrome c (horse heart) (MW 12384), myoglobin (horse skeletal muscle) (MW 17800), and lysozyme (chicken egg) (MW 13680) were purchased from Sigma (St. Louis, MO, USA). Dibasic potassium phosphate was obtained from FUJI FILM Wako Pure Chemical Co. (Osaka, Japan). All other reagents were of reagent grade.
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3

Protein Purification Protocols

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Polyethylene glycol (PEG) 1000 (MW 1,000), cytochrome C (horse heart) (MW 12,384), myoglobin (horse skeletal muscle) (MW 17,800), and lysozyme (chicken egg) (MW 13,680) were purchased from Sigma (St. Louis, MO, USA). Dibasic potassium phosphate was obtained from Wako Pure Chemicals (Osaka, Japan). All other reagents were of reagent grade.
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4

Lysozyme Azide Conjugation Protocol

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5 mg chicken egg lysozyme (Sigma-Aldrich) was dissolved in 950 μl of 0.1 mM NaHCO3 buffer, pH 8.3. 1 mg azide-PEG2-NHS ester (BroadPharm, San Diego) was dissolved separately in 50 μl DMSO. The two solutions were mixed together and incubated for 2 h at 22°C with gentle rotation of the tube. 50 mM ethanolamine was then added and the reaction solution incubated for a further 0.5 h at 22°C to quench unreacted NHS ester. The reaction mixture was then passed through Mirocon-10k centrifugal filters (10k Da size cut-off, Cedarlane, Burlington). Two further washes, each with 400 μl ddH2O, were carried out. The concentrated protein was dissolved in about 100 μl 10 mM HEPES buffer (pH 7.4). The concentration of protein was determined by the BCA assay (BCA protein assay kit, Thermo Fisher Scientific, Toronto), and mass spectrometry was carried out to verify the azide-labeling.
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5

Turbidimetric Lysozyme Quantification Protocol

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The turbidimetric method of Litwack67 (link) was used to measure the amount of lysozyme in blood plasma. Micrococcus lysodeikticus bacterium standard solution was prepared by adding 0.6 mg of M. lysodeikticus for every millilitre of phosphate buffer (0.05 M Na2HPO4⋅2H2O: disodium hydrogen phosphate dihydrate, in 1000 ml distilled water; pH 6.2). A 100 µl of blood serum was taken into a cuvette on a spectrophotometer set at 450 nm. The cuvette was filled with 650 µl of M. lysodeikticus solution. After 30 s of combining the bacterial solution and serum, the initial absorbance reading was taken. The absorbance was recorded for 3 to 5 min at 30-s intervals. The absorbance was put on the standard curve's Y-axis, and the lysozyme concentration was calculated by back-calculation. The standard curve was plotted by chicken egg lysozyme activity against the bacterial solution. The powdered form of chicken egg lysozyme (Sigma Chemical Company, St. Louis, USA) was diluted into a stock solution of 40 ml by adding 1 mg of lysozyme powder to the buffer. The following standard solutions were used: 1, 2, 4, 5, 8, and 10 µg/ml). The standards were reacted with the bacterial solution. A standard curve was plotted to put the optical density along the Y-axis, with the standard concentration along the X-axis.
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6

Biochemical Assay for Enzyme Activity

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DNase I, NAD+, p-iodonitrotetrazolium violet (INT), L- and D-glutamic acid, L-glutamate dehydrogenase, diaphorase, isopropyl-β-D thiogalactopyranoside (IPTG), bovine serum albumin (BSA), chicken egg lysozyme, kanamycin were purchased from Sigma-Aldrich. Other chemicals were reagent grade.
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7

Isolation of Cell-free Inclusion Bodies

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Cell-free inclusion bodies were collected by following a modified isolation protocol detailed elsewhere42 (link). Briefly, mid-log phase cells were pelleted and resuspended in ice-cold lysis buffer made from 50 mM TrisHCl (pH 8.8) (Fisher), 100 mM NaCl (Sigma), 1.5 mM EDTA (Sigma) and distilled water. This suspension was flash frozen to −80 °C, thawed at room temperature, and combined with chicken egg lysozyme (to 1 mg/ml) and PMSF (to 200 μM) (Sigma). After incubating at 37 °C for 1 h Triton-100× (to 1 μl/ml), NP-40 (to 0.1 μl/ml) (as IGEPAL from Sigma), DNAse (to 0.3 g/ml) (Sigma), and MgSO4 (to 0.15 mM) (Fisher) were added; this suspension was incubated for 1 h at 37 °C. Finally, the lysate was pelleted at 15,000g for 15 min and washed twice in lysis buffer before being resuspended in distilled water + 5% glycerol and stored in aliquots at −80 °C.
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8

Measuring Mussel Lysozyme Activity

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The lysozyme activity was measured in duplicates for each mussel (n=30) in 100 µL of cell free hemolymph (centrifuged for 10 min at 1000 g) with 100 µL of Micrococcus lysodeikticus prepared at 0.4 mg/mL in a 100 mm phosphate buffer at pH 6.2. Absorbance was immediately measured at 450 nm with a microplate reader Synergy4 (Software: Gen5 V:2.05) and then every minute after the initial reading for a total of 5 min. The decrease in absorbance at 450 nm/min was than calculated like previously described by Lee and Yang (2002).9 (link) A unit of lysozyme activity is defined as the quantity of enzyme, which causes a decrease of 0.001 per minute in absorbance at pH 6.2 at 25°C. All lysozyme and protein measurements were done in 96-well plates in duplicates. Chicken egg lysozyme (Sigma, ON, Canada) was used for calibration and the results expressed were standardized by the protein concentration in hemolymph using the protein dye binding method.
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9

Glycation-induced Protein Cross-linking Inhibition by COS

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Glycation induced protein cross-linking inhibitory effect of COS was assessed using the method described by Perera and Ranasinghe [37 ]. Briefly, chicken egg lysozyme (Sigma) was incubated with fructose in the presence or absence of 250 μg/ml or 2 mg/ml COS extracts for 14 days. Other conditions were as described in the fructosamine assay and incubated for 14 days. Aliquots were collected at day 6 and 14 and analyzed for the appearance of high molecular weight products using sodium dodecyl polyacrylamide gel electrophoresis (SDS-PAGE). Electrophoresis was carried out with the Enduro Vertical Gel Electrophoresis system- E2010-P according to the standard Laemmli method using 12 % SDS-polyacrylamide gels [36 (link)]. Gels were stained with Coomassie brilliant blue. Appearance of high molecular weight products of lysozyme in the aliquots was compared. Experiments were repeated three times.
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10

Peptide Synthesis and Characterization

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The following peptides were used in the study:
VYPNGA-NH2, VYPDGA-NH2, VYPL-isoDGA-NH2 (L-isoD is l-isoaspartic
acid), PGPQGFQ-NH2, PGPEGFQ-NH2, and PGPL-isoEGFQ-NH2 (L-isoE is l-isoglutamic acid). These peptides were custom-synthesized
by Biomatik Corp. (Kitchener, ON, Canada). Additionally, delta-sleep-inducing
peptide (DSIP, WAGGDASGE), l-isoAsp5-delta-sleep-inducing
peptide (L-isoD-DSIP, WAGGL-isoDASGE), and d-isoAsp5-delta-sleep-inducing peptide
(D-isoD-DSIP, WAGGD-isoDASGE)
were obtained from Bachem America (Torrance, CA). Chicken egg lysozyme,
rituximab, pyridine, acetic anhydride, deuterium oxide (99.9 atom
% D), and hydrazine (35 wt % in H2O) were purchased from
Sigma-Aldrich (St. Louis, MO). All other chemicals were either of
reagent grade or the highest commercially available quality.
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