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11 protocols using ab74290

1

MTT Assay for Apoptosis Evaluation

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3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) was purchased
from Sigma Aldrich (Merck KGaA) Nitroxoline was kindly provided by Dr Cheng Luo
as a gift, while bortezomib was obtained as a pure substance from Millennium
Pharmaceuticals. Antibodies against B-cell lymphoma 2 (Bcl-2) (ab182858),
Bcl-2-associated X protein (Bax) (ab32503), cleaved poly (ADP-ribose) polymerase
(PARP) (ab74290), cyclin D1 (ab134175), p21(ab109199) and GAPDH (ab128915) were
obtained from Abcam, while the antibody against cleaved caspase-3 (cat. no.
9664), anti-rabbit HRP secondary antibody (cat. no. 7074) was purchased from
Cell Signaling Technology, Inc. RPMI 1640 medium and fetal bovine serum (FBS)
were purchased from Thermo Fisher Scientific, Inc. (Gibco).
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2

Protein Quantification and Western Blot

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CAL27 and SCC-4 cells were cultured in RIPA buffer with protease inhibitor cocktails (AMRESCO), lysed for 30 min with brief vortexing every 10 min. Then centrifuge the lysates for 15 min at 4 °C and detect protein concentrations using the BCA Protein Assay Reagent (Pierce, Appleton, Wisconsin, USA). Post separation of 40 μg protein by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), the lysate was transferred to nitrocellulose membranes. The membranes were incubated with primary antibodies against cleaved PARP (ab32064; Abcam), PARP (ab74290; Abcam), cleaved caspase-3 (ab2302; Abcam), caspase-3 (ab13847; Abcam), hnRNPC (ab97541; Abcam), AK4 (ab232888; Abcam) or GAPDH (sc-32233; Santa Cruz Biotechnology, Santa Cruz, CA, USA) at 4 °C overnight. After washing, the membrane was cultured with horseradish peroxidase-conjugated (HRP) secondary antibody (Santa Cruz Biotechnology, Inc., Dallas, TX, USA) at room temperature for 2 h. Finally, the signals were estimated by enhanced fluorescence as suggested.
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3

Immunoblotting analysis of cellular proteins

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Anti-COX2/Cyclooxygenase 2 antibody (ab179800), anti-Cleaved PARP1 antibody (ab32561), anti-PARP antibody (ab74290), anti-XIAP antibody (ab21278), anti-MMP9 antibody (ab73734), anti-Cyclin E1 antibody (ab33911) and anti-GAPDH antibody (ab181602) were purchased from Abcam (Cambridge, U.K.) and were used as primary antibodies. Proteins were collected on ice using NP40 cell lysis buffer for 30 min and then were separated by 8% sodium dodecyl sulfate/polyacrylamide gel electrophoresis (SDS/PAGE). Then the gel was transferred on to polyvinylidene difluoride (PVDF) membrane for 2 h. Five percent milk-TBST (TBS with 0.05% Tween 20) was used for 1 h to block membrane and then was incubated with specific primary antibodies overnight at 4°C. Before incubated by secondary antibody for 1.5 h, the membrane was washed by TBST. ECL reagent was used to visualize proteins and ImageJ software was used to analyze the obtained data.
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4

Colorectal Cancer Apoptosis Regulation

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The tested compounds were provided by Dongdong Sun (Nanjing University of Chinese Medicine). For the treatment, the compounds were dissolved in culture medium and DMSO [with DMSO less than 0.1%(v/v)]. HCT116 colorectal cancer cells were supplied from the cell bank of the Chinese Academy of Sciences (Shanghai, China). RPMI 1640 culture medium was provided by Biological Industries (Beit‐Haemek). TUNEL apoptotic commercial kit was produced by Beyotime. Annexin V‐PI kit was purchased from KeyGEN. α‐ketoglutarate as obtained from Jinglai Biotechnology. The commercial kits for ATP, glutamine, glutamate and glutathione were provided by Jiancheng Biotechnology. The ASCT2 inhibitor GPNA was produced by Sigma‐Aldrich. Pifithrin‐α, the selective inhibitor for P53, was obtained from APExBIO. ASCT2 (#ab84903, 1:1000), P53 (#ab26, 1:1000), caspase‐3 (#ab197202, 1:1000), caspase‐7 (#ab69540, 1:1000), cleaved‐caspase‐3 (#ab2302, 1:1000), cleaved‐caspase‐7 (#ab2323, 1:1000), cleaved‐PARP (#ab32064, 1:1000), PARP (ab74290, 1:1000) and survivin (ab76424) were purchased from Abcam.
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5

Protein Expression Profiling via Western Blot

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Protein was extracted using protein extraction kit (KeyGEN BioTECH), and protein concentration was determined by BCA Protein Assay Kit (KeyGEN BioTECH). 30 μg of protein was separated by SDS‐PAGE and transferred onto PVGF membranes, which were followed by incubating with 5% non‐fat milk for 1.5 hours at room temperature. Afterwards, membranes were incubated with the primary antibodies against six2 (ab132611), ALDH1 (ab23375), Nanog (ab21624), cleaved caspase 3 (ab2302), caspase 3 (ab13847), cleaved PARP (ab32064), PARP (ab74290), which were purchased from Abcam. Primary antibody against β‐actin (cat # AF0003) was purchased from Beyotime. After incubating with primary antibodies, blots were washed and incubated with a secondary peroxidase‐conjugated antibody (KeyGEN BioTECH), and chemiluminescence was detected using an enhanced chemiluminescence kit (ThermoFisher Scientific) followed by exposure in Tanon 5200 (Tanon).
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6

Western Blot Analysis of Protein Signaling

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Protein extracts (10 μg) prepared from LCLs or B lymphocytes were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Millipore, Wisconsin, USA). The membranes were blocked with 5% milk in Tris-buffered saline (pH 7.6) containing 0.1% Tween 20 and incubated overnight at 4°C with specific primary antibodies against the following proteins: TNF receptor-associated factor 1 (TRAF1, 1 : 1000, ab203316, abcam, Cambridge, UK), IκB kinase (IKK)-α (1 : 10000, ab109749, abcam), NF-κβ-inducing kinase (NIK, 1 : 500, ab203568, abcam), P52 (1 : 2000, ab129097, abcam), pro-caspase 3 (1 : 1000, ab32150, abcam), caspase 3 (1 : 500, ab49822, abcam), poly (ADP-ribose) polymerase (PARP, 1 : 2000, ab74290, abcam), and β-actin (1 : 5000, 66009-1-Ig, Proteintech, USA). After three washes with PBS/Tween 20, the membranes were incubated with horseradish peroxidase-conjugated secondary goat antirabbit IgG (1 : 20000, PAB160011, Bioswamp) for 2 h at room temperature. Protein bands were visualized by enhanced chemiluminescence color detection (Tanon-5200, TANON, Shanghai, China) and analyzed using AlphaEase FC gel image analysis software.
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7

Western Blot Analysis of Apoptosis and Cell Signaling

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Cell protein was collected by RIPA lysis buffer (KeyGEN, Nanjing, China) containing 1 nM PMSF (Biotool, Houston, TX, USA). 20 μg protein per well was electrophorsed in 10% SDS-PAGE gels and then transferred to polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA), and incubated with different primary antibodies, including GALNT3 (16716–1-AP, Proteintech, China), caspase3 (ab13847, Abcam, the UK), cleaved caspase3 (ab13585, Abcam, the UK), PARP (ab74290, Abcam, the UK), cleaved PARP (ab4830, Abcam, the UK), MUC1 (ab15481, Abcam, the UK), PI3K-p110α (21890–1-AP, Proteintech, China), p-AKT 308 (AP3743a, Abgent, China), p-AKT 473 (AP3434a, Abgent, China), AKT (ab8805, Abcam, the UK), NF-κB (AP50006, Abgent, China) and GAPDH (AP7873a, Abgent, China), at 4 °C overnight. The membrane was treated with anti-rabbit IgG at 37 °C for 2 h. All bands were detected by an ECL Western blot kit (Thermo Fisher Scientific, USA) and analyzed by Lab Works (TM ver4.6, UVP, Bio Imaging Systems, NY, USA). GAPDH was used as control.
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8

Western Blot Analysis of Apoptosis-Related Proteins

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Following the obtaining of proteins by Radio-Immunoprecipitation Assay (RIPA) lysis and extraction buffer (Thermo Fisher Scientific, Waltham, MA, USA), 40 μg proteins were split on 10% sodium dodecyl sulfate–polyacrylamide gel (Invitrogen) for 2 h. 5% skim milk (Thermo Fisher Scientific) was implemented to block the non-specific binding signals after the transferring of proteins onto the polyvinylidene fluoride membranes (Thermo Fisher Scientific). Then membranes were incubated with primary antibodies: anti-CREBRF (Abcam, Cambridge, UK, ab26262, 1:1000), anti-poly-ADP-ribose polymerase (anti-PARP; Abcam, ab74290, 1:1000), anti-Cleaved PARP (Abcam, ab30264, 1:1000), anti-Cleaved caspase-3 (Abcam, ab2302, 1:1000) and anti-β-actin (Abcam, ab8227, 1:3000) for 3 h at room temperature. Subsequently, the secondary antibody (Abcam, ab205718, 1:5000) was exploited to bind to primary antibodies. 1 h later, the detection of combined signals was administered by the enhanced chemiluminescence reagent (Abcam). Ultimately, ImageLab software version 4.1 (Bio-Rad Laboratories, Hercules, CA, USA) was used for image acquisition and densitometric analysis previously [22 (link)].
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9

GRP78 Immunostaining in Tissue Sections

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After drying at room temperature, slices were fixed by pre-cold acetone for 6 min, washed by 0.01 m PBS for three times, incubated with formamide/twice sodium citrate hybrid solution at 65 °C for 2 h, incubated with 0.3% triton for 30 min, washed by PBS for 3 times, washed by 2 m HCl at 37 °C for 30 min, by 0.1 mol/L boric acid buffer (pH = 8.0) twice, by 0.01 m PBS twice, and then blocked by 10% goat serum (Shanghai Sangon Biotechnology Co. Ltd., Shanghai, China) for 1 h at 37 °C. And then, slices were incubated with GRP78 (Abcam, ab21685, rabbit, 1: 2000) overnight at 4 °C. After incubation, slices were washed by PBS and incubated with FITC-labeled IgG (Abcam, ab74290, 1:2000) for 45 min at room temperature. After that, slices were mounted by anti-fluorescence quenching agent and observed under a confocal microscope (Leica Microsystems, Mannheim, Germany).
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10

Western Blot Analysis of Protein Markers

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Protein was extracted using protein extraction kit (KeyGEN BioTECH, Nanjing, China). Protein concentration was examined by Bradford assay. A total of 30 µg of protein was separated by SDS-PAGE, and transferred onto polyvinylidene fluoride (PVDF) membranes, which was followed by incubation with 5% nonfat milk for 1.5 hours at room temperature. Afterward, membranes were incubated with primary antibodies against STARD13 (ab126489), ALDH1 (ab52492), Nanog (ab21624), Ki67 (ab15580), cleaved caspase 3 (ab2302), Caspase-3 (ab13847), cleaved PARP (ab32064), PARP (ab74290), YAP (ab52771), RhoA (ab187027), and CTGF (ab6992), which were purchased from Abcam (Cambridge, UK). Primary antibodies against pMLC-S19 (Cat # 3675) and MLC (Cat # 3672) were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody against β-actin (Cat # AF0003) was purchased from Beyotime (Beijing, China). After incubating with primary antibodies, blots were washed and incubated with a peroxidase-conjugated antibody, and chemiluminescence was detected using an enhanced chemiluminescence kit (Thermo Fisher Scientific), followed by exposure in Tanon 5200 (Tanon, Shanghai, China).
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