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23 protocols using anti c fos

1

Immunohistochemical analysis of adropin, c-Fos, and TRPV4

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Cells and brain tissue samples were fixed in 4% formaldehyde, dehydrated in a 30% sucrose solution, and sectioned into 20-μm-thick sections using Leica Microsystems Nussloch GmbH (D-69226, Germany). After blocking with 10% normal goat serum, the samples were permeabilized using 0.1% Triton-X 100, and incubated with various primary antibodies, including anti-adropin (1:200), anti-c-Fos (1:200) and anti-TRPV4 (1:200; Abcam, Cambridge, UK). After washing, samples were probed with the appropriate secondary antibodies (Jackson Immunoresearch, West Grove, PA, USA). Micrographs were selected and captured using a laser confocal microscope, and analyzed using MagnaFire SP 2.1B software (Olympus, Melville, NY, USA).
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2

Immunocytochemistry and Western Blotting Protocols

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Primary antibodies used for immunocytochemistry were purchased from commercial suppliers: anti‐c‐FOS (4): sc‐52 (dilution: 1:200, Santa Cruz, #F0215) and anti‐c‐FOS (dilution: 1:1,000, Abcam, #ab208942). For Western blotting, the following primary antibodies were purchased from commercial suppliers: anti‐PSD95 (dilution 1:4,000, Synaptic Systems, #124011), anti‐Homer1 (dilution 1:10,000, Synaptic Systems, #160022), anti‐mGluR5 (dilution 1:1,000, Millipore, #2757164), and anti‐Beta III Tubulin (dilution 1:250,000, Covance, #PRB‐435P).
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3

Osteoclast Differentiation Assay

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Amlexanox was purchased from Sigma Aldrich (St Louis, MO, USA). Recombinant soluble human macrophage-colony stimulating factor (M-CSF) and mouse receptor activator of nuclear factor-κB ligand (RANKL) were obtained from Peprotech (Rocky Hill, NJ, USA). The cell counting kit-8 (CCK-8) was purchased from Dojindo (Kumamoto, Japan). The following antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA): ERK (#9102), phospho-ERK (#4377), JNK (#9258), phospho-JNK (#4668), p38 (#8690), phospho-p38 (#4511), p65 (#8242), phospho-p65 (#3033), IKK-ε (#2690), TBK1 (#3013), IKKβ (#8943), IκBα (#4812), phospho-IκBα (#2859), NFATc1 (#8032). Anti-c-Fos was purchased from Abcam (Cambridge, MA, USA). The NF-κB probe was purchased from Beyotime (Shanghai, China). The TRAP staining kit and all other reagents were purchased from Sigma Aldrich.
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4

Biochemical Markers Quantification Protocol

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FITC-dextran (MilliporeSigma, Burlington, MA, USA), ELISA kits for TNF-α, IL-1β, IL-10, and lipocalin were purchased from R&D Systems (Minneapolis, MN, USA). Antibodies against GFAP, Aβ, BACE-1, and PSD-95 were purchased from Cell Signaling Technology Inc. (Danvers, MA, USA). Anti-synaptophysin, anti-synapsin 1, anti-cFos, and anti-COX-2 antibodies were purchased from Abcam (Cambridge, MA, USA). Anti-Iba-1 antibody was purchased from Wako Chemicals USA, Inc. (Richmond, VA, USA). iNOS antibody was purchased from BD, Biosciences (San Jose, CA, USA). Anti-GAPDH, α-tubulin antibodies and horseradish peroxidase-conjugated secondary antibodies (goat anti-mouse IgM, goat anti-mouse IgG, goat anti-rabbit, goat anti-rat, bovine anti-goat and bovine anti-mouse were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Elite Vectastain ABC reagents, Vector VIP, biotinylated anti-rabbit, and anti-mouse antibodies were purchased from Vector Laboratories Inc (Burlingame, CA, USA). Standards used in mass spectroscopy analysis were purchased from MilliporeSigma (Burlington, MA, USA). Autosampler vials were obtained from ThermoFisher Scientific, (Waltham, MA, USA), silanized micro-vial inserts were from Agilent (Santa Clara CA; part #5181-8872) and inserts were from VWR (Radnor, PA, USA).
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5

Western Blot Analysis of Liver Proteins

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Protein concentrations (n = 4) were determined in the supernatant of liver tissues by classic BCA protein assay (Beyotime). Equal amounts of protein from each sample were fractionated by SDS-PAGE and transferred onto polyvinylidene fluoride membranes using Bio-Rad western blotting apparatus. The membranes were blocked with 5% fat-free milk or 5% bovine serum albumin, and then probed with the following primary antibodies for 12 h at 4°C: anti-GAPDH (1:2000), anti-PI3K (1:1000), anti-Akt (1:1000), anti-p-Akt (1:1000), anti-PTEN (1:500), anti-Raptor (1:1000), anti-Rictor (1:800), anti-p-Rb (1:1000), anti-C-fos (1:800), anti-C-myc (1:1000), anti-C-jun (1:1000), anti-Fas (1:1000), and anti-Fas-L (1:1000) (Abcam, Cambridge, United Kingdom). The membranes were incubated with appropriate horseradish-peroxidase-conjugated secondary antibodies (1:2000–1:3000, Abcam), and visualized with an enhanced chemiluminescence (ECL) detection kit (Millipore). Bands were quantified using Quantity One version 4.40 software (Bio-Rad).
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6

Western Blot Analysis of Cell Stress Markers

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Cells were grown in 60 mm dishes and treated with 3 Gy radiation, shRNA2, or a combination of both radiation and shRNA2. Cells were washed with ice-cold PBS and scraped into ice-cold lysis buffer (comprised of TRIS-HCl pH 7.8 20 mM, NaCl 137 mM, EDTA pH 8.0 2 mM, NP40 1%, glycerol 10%, NaF 10 mM, Leupeptin 10μg/mL, Na2VO4 200 μmol/L, PMSF 5mM, and Aprotinin (Sigma-Aldrich, MO, USA). Lysates were cleared by centrifugation at 13,000 rpm for 10 min at 4°C, and supernatants removed and assayed for protein concentration using the Pierce BCA bovine serum albumin. Protein was quantified using BCA protein assay (Thermo Scientific), separated by SDS-PAGE, transferred to polyvinylidene difluoride (PVDF;Bio-Rad), and probed with the indicated antibodies. Bands were visualized using Pierce ECL Western Blotting Substrate (Thermo Scientific). Anti- c-Fos was purchased from Abcam; Anti-cyclinB1, Anti-cleaved PARP and anti-GAPDH were purchased from Cell Signaling Technology. Donkey-anti-rabbit and sheep-anti-mouse horseradish peroxidase-conjugated secondary antibodies were purchased from GE Healthcare. Images were captured with a FUJIFILM LASS-3000 camera system.
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7

Taxifolin Mediated Osteoclastogenesis Inhibition

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Taxifolin (HPLC ≥ 98%) was purchased from Sigma-Aldrich (Shanghai, China). Recombinant soluble human M-CSF and mouse receptor activator of nuclear factor-κ B ligand (RANKL) were obtained from PeproTech (Rocky Hill, NJ, United States). The MTT Cell Proliferation and Cytotoxicity Assay Kit was purchased from Boster (Wuhan, China). The following antibodies were purchased from Cell Signaling Technology (Beverly, MA, United States): ERK (#9102), phospho-ERK (#4377), JNK (#9258), phospho-JNK (#4668), P38 (#8690), phospho-P38 (#4511), IKKβ (#8943), phospho-IKKα/β (#2697), P65 (#8242), phospho-P65 (#3033), IκB-α (#4812), phospho-IκB-α (#2859), NFATc1 (#8032), and RANK (#4845). Anti- C-Fos was purchased from Abcam (Cambridge, MA, United States). Antibodies against Cathepsin K, MMP-9, and TRAP were obtained from Proteintech Group (Wuhan, Hubei, China) The NF-κB and AP-1 probe was purchased from Beyotime (Shanghai, China). The TRAP staining kit and all other reagents were purchased from Sigma-Aldrich.
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8

Immunohistochemistry for c-Fos in Mouse Brain

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Mice were deeply anesthetized with isoflurane, then intracardially perfused with perfusion buffer followed by 4% paraformaldehyde (PFA) in phosphate buffer (PB), pH 7.4, at room temperature for 30 min. Brains were fixed in 4% PFA overnight at 4°C and transferred to 30% sucrose in PBS to equilibrate for 3 days. Then, 30 µm coronal sections were cut on a cryostat (Leica) and washed with PBS for 10 min. Sections were washed with PBS with 0.3% Triton X-100 (PBST) for 10 min, and incubated in PBST containing 3% normal donkey serum (NDS) for 1 h at room temperature. Sections were incubated with primary antibody, anti-c-fos (1 : 500; Abcam) diluted in PBST with 3% NDS overnight at 4°C. Sections were then washed in PBS and incubated for 2 h at room temperature with Alexa Fluor 488 (1 : 500; Invitrogen) and Alexa Fluor 594 (1 : 500; Invitrogen) in 5% normal goat serum and NDS in PBST. Sections were washed in PBS and coverslipped with Vectashield mounting medium with DAPI. Slides were stored at 4°C until use.
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9

Assessing Neuronal Activity in Gi-DREADD Mice

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To stimulate neuronal activity and thereby generate the resolution to verify decreased activity in mice bearing Gi-DREADDs, mice were exposed to the forced swim test. A glass cylinder (24 cm × 15.5 cm diameter) was filled with 25°C water. CNO was administered 30 min prior to testing. After 6 min, mice were dried and placed in a warm cage. After 60 min, brains were collected.
Sections were blocked in a solution containing 2% NGS, 1% BSA, and 0.03% Triton X-100 (Sigma) for 90 min at room temperature. Then, sections were incubated with the primary antibody solution containing anti-c-Fos (1:500; Abcam), 2% NGS, and 0.03% Triton X-100 at 4°C overnight. Sections were then incubated in a secondary antibody solution containing Alexa Fluor 488 or 647 (1:500; Life Technologies), 2% NGS, and 0.03% Triton X-100 at room temperature for 1 h. Sections were mounted and coverslipped.
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10

Immunohistochemistry of Celiac Ganglia

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The celiac ganglia were dissected from MeAàVMHhM3Dq or mCherry control mice euthanized 2h after CNO administration. The tissue was post-fixed in 4% paraformaldehyde at 4°C overnight, cryo-protected in 30% sucrose (Sigma-Aldrich, 50389) in PBS, embedded in O.C.T Compound (Thermofisher Scientific, Watham, MA; 23–730-572), frozen at −80°C, and sectioned at 10μm thickness. Slides were washed in 0.03% PBT (3 × 5 minutes), incubated in blocking solution overnight at 4°C (2% normal donkey serum, 3% bovine serum albumin in 0.03% PBT), incubated in primary antibodies for 48h at 4°C (Cell Signaling anti-cfos – 1:100; abcam chicken polyclonal to tyrosine hydroxylase [#ab76442] – 1:500), washed in 0.03% PBT (3 × 5 minutes), incubated in secondary antibodies for 2h at RT (Jackson AF-647 donkey anti-rabbit – 1:250; Jackson AF-594 donkey anti-chicken – 1:500), and washed in 0.03% PBT (3 × 5 minutes). After staining, tissue sections were mounted with DAPI counterstain (Fluoromount).
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