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Biotinylated sna

Manufactured by Vector Laboratories
Sourced in United States

Biotinylated SNA is a lectin purified from Sambucus nigra (black elderberry) that binds to sialic acid residues. It is conjugated with biotin, a small molecule that can be used to detect and label target molecules.

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15 protocols using biotinylated sna

1

Lectin Reactivity of Anti-TF IgG

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The lectin reactivity of the TF-specific IgG was measured by ELISA in a similar way, except that the binding of neuraminic acid- (sialic acid-) specific Sambucus nigra agglutinin (SNA) and mannose-specific concanavalin A (ConA) to the absorbed serum anti-TF Abs (all isotypes) or anti-TF IgG from tIgG samples was measured as described elsewhere [19 (link), 21 (link)]. Biotinylated SNA (Vector Laboratories Inc., USA) in 10 mmol/L HEPES, 0.15 mol/L NaCl, and 0.1 mmol/L CaCl2, pH 7.5, and biotinylated ConA (Sigma, USA) in the ConA binding buffer (0.05 mol/L Tris-HCl buffer, pH 7.2, containing 0.2 mol/L NaCl and 3 mmol/L CaCl2, MgCl2, and MnCl2) were both applied at a concentration of 5 μg/mL each, for 1.5 h at 25°C. The bound lectins were detected with a streptavidin-alkaline phosphatase conjugate (Dako, Denmark) and p-nitrophenylphosphate (Sigma, USA). The optical density value of control wells (no sample) was subtracted from that of Ab-coated wells to determine the lectin binding. Each sample was analyzed in duplicate.
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2

Sialic Acid Detection in Human Tissue Sections

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Tissue sections were baked at 60 °C for 45 min followed by deparaffinization with xylene and rehydration with graded alcohols. Antigen retrieval was done by heating slides in a pressure cooker for 3 min in citrated buffer (pH 6.0, 10 mM trisodium citrate). After cooling down at room temperature, tissue sections were incubated with 3% hydrogen peroxide for 10 min. For neuraminidase treatment, slides were incubated at 37 °C for 3 h in 5 mM CaCl and 50 mM ammonium acetate containing 2000 U/mL of neuraminidase (New England Biolabs P0720) and then blocked with 5% normal goat serum or BSA in Tris-buffered saline with 0.1% Tween-20 (TBST) for 1 h at room temperature. Slides were incubated with primary antibodies (5 μg/ml) or biotinylated SNA (20 μg/ml) (Vector Labs) ON at 4 °C. Next, slides were incubated with HRP-conjugated anti-rabbit, anti-mouse or streptavidin secondary antibodies (KPL Inc., Gaithersburg, MA) at room temperature for 1 h. Signals were visualized by incubating sections with Aminoethylcarbazole (AEC) substrate solution (Invitrogen), and cell nuclei were counterstained with hematoxylin (Invitrogen). Slides were imaged on ImageXpress Pico Automated Cell imaging system (Molecular Devices). Human tissue sections mounted on glass slides in 5-μ sections were obtained from US Biomax, Rockville, MD.
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3

Lectin-Histochemistry Analysis of Carcinoma Tissue

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Lectin-histochemistry staining to detect MAL-SG and SNA-SG in CCA tissue was processed as previously described [3 (link)]. In brief, CCA tissue sections were de-paraffinized, re-hydrated, and incubated with 40 µg/mL of biotinylated-MAL-II and 1 µg/mL biotinylated-SNA (Vector Laboratories, Burlingame, CA, USA), respectively. Negative control slides were incubated with phosphate buffer saline (PBS) instead of biotinylated-lectin. Expression of MAL-SG and SNA-SG in CCA tissues was semi-quantified as a MAL-SG score and a SNA-SG score, according to their staining intensity (0, negatively stained; 1+, weakly stained; 2+, moderately stained; and 3+, strongly stained) and frequency of each intensity (% of total area) based on the H-Score system [29 (link)].
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4

TF-Glycotope Antibody Lectin-Reactivity Assay

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The SNA lectin-reactivity of TF-glycotope specific antibodies was measured in a similar way.
The plates (Maxisorp, NUNC, Denmark) were coated with synthetic TF polyacrylamide conjugate (10 mol% of carbohydrate; Lectinity, Russia) in carbonate buffer, pH 9.6, 5 μg per well. After overnight incubation at +4°C, triple washing and blocking with Superblock solution (Pierce, USA) for 30 min at 25°C, the serum samples (diluted 1 : 25 in PBS-0.05% Tween) were applied for 1.5 hr at 25°C. After subsequent washing with PBS-Tw, the biotinylated SNA (Vector Laboratories Inc., USA) in 10 mmol/L Hepes, 0.15 mol/L NaCl, 0.1 mmol/L CaCl2, and pH 7.5 was applied at a concentration of 5 μg/mL for 1.5 hr at 25°C. The bound lectin was detected with a streptavidin-alkaline phosphatase conjugate (Dako, Denmark) and p-nitrophenylphosphate (Sigma, USA). The optical density value (OD) of control wells (no sample) was subtracted from the Ab coated wells. Each sample was analysed in duplicate.
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5

Sialic Acid IgG Detection

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In vitro prepared SA-IgG and NSA-IgG boiled with 5×SDS loading buffer for 10 min. The samples were separated on 10% SDS-PAGE gels and transferred onto a NC membrane. The membrane was incubated with diluted biotinylated-SNA (1:100, VECTOR, USA) at 4 °C overnight. Subsequently, HRP-streptavidin (1:1000, Abcam, UK) was added to bind SNA. The band was detected by western lightning plus ECL reagent (GE Healthcare, USA).
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6

Lectin Reactivity of TF Glycotope Antibodies

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The lectin reactivity of TF glycotope-specific antibodies was measured in a similar way, except that the binding of the neuraminic acid (sialic acid) specific Sambucus nigra agglutinin (SNA) to the absorbed anti-TF antibodies was determined as described earlier [37 (link)]. The biotinylated SNA (Vector Laboratories, Inc., USA) in 10 mmol/L Hepes, 0.15 mol/L NaCl, 0.1 mmol/L CaCl2, pH 7.5 was applied at a concentration of 5 μg/mL for 1.5 h at 25°C. The bound lectin was detected with a streptavidin-AP conjugate (Dako, USA) and pNPP (Sigma, USA). The OD of control wells (no serum sample) was subtracted from that of Ab-coated wells to determine the lectin binding. Each sample was analysed in duplicate. The value of the SNA binding to all TF-specific Abs and the ratio of SNA binding to the level of TF-specific IgG, IgM, and IgA (SNA/Ig index) were determined.
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7

Lectin Reactivity of E2-specific IgG

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The lectin reactivity of E2-specific IgG antibodies was measured in a similar way, except that the binding of the neuraminic acid (sialic acid)-specific Sambucus nigra agglutinin (SNA) to the absorbed anti-E2 antibodies was determined. The biotinylated SNA (Vector Laboratories, Inc., USA) in 10 mmol/L Hepes, 0.15 mol/L NaCl, 0.1 mmol/L CaCl2, and pH 7.5 was applied at a concentration of 5 μg/mL for 1.5 h at 25°C. The bound lectin was detected with a streptavidin-AP conjugate (Dako, USA) and pNPP (Sigma, USA). The O.D. of control wells (no serum sample) was subtracted from that of Ab-coated wells to determine the lectin binding. Each sample was analyzed in duplicate. The value of the SNA binding to E2-specific Abs and the ratio of SNA binding to E2-specific IgG value (SNA/IgG ratio) were determined.
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8

JEV Binding Assay Protocol

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For JEV binding assays, C6/36 cells were seeded in 24-well plates containing coverslips. After JEV attachment, the cells were washed with PBS and fixed with 4% paraformaldehyde for 1 h. Cells were then blocked in 1% BSA for 1 h. JEV envelope antigens were immunostained with primary anti-JEV envelope polyclonal antibody at 1:200 at 4°C dilution and secondary Alexa Fluor 647-conjugated anti mouse IgG antibody (Abcam) at 1:200 dilution for 1 h at room temperature. For sialic acid staining, biotinylated SNA (Vector labs) was used to stain α2, 6-linked sialic acid at 1:200 dilution for 1 h at room temperature. FITC-conjugated streptavidin (Solarbio) was added at a 1:200 dilution for 1 h at room temperature. Cell nuclei were stained with DAPI (Beyotime). Images were examined using an Echo Revolve microscope.
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9

Quantifying ST6Gal1 and Lamp1 Sialylation

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For Western blots for ST6Gal1 protein, cells were lysed in RIPA buffer with added protease and phosphatase inhibitors. We used R&D Systems human ST6Gal1 antibody diluted 1:500 (Cat#AF5924) and β-actin as loading control (Santa Cruz, 1:500, Cat#sc-47778 HRP). We also assessed the effect of ST6Gal1 ablation on Lamp1 α2,6 sialylation. BCP-ALL cells were lysed in Triton T-100 lysis buffer with glycerol at pH 7.4 (Alfa Aesar, Cat#J63866AK) and glycoproteins were captured with SNA-biotin (Vector labs Cat #B-1305). Dynabeads Streptavidin magnetic beads (Invitrogen, Cat#65801D) were used to isolate the SNA-bound glycoproteins. Proteins were separated on 4%–20% SDS-PAA gradient gels (Mini-PROTEAN® TGX Stain-Free™ Protein Gels, Bio-Rad, Cat#4568094). Lamp1 (CD109a) antibodies used at 1:1,000 dilution were from BioLegend (Cat#328602). The WB for OP9 cells used anti-Galectin-3 (BioLegend, 1:1,000, Cat#125402) or Galectin-1 (R&D Systems, 1:1,000, Cat#AF1152) antibodies. Western blotting for α2,6-sialylated proteins made use of biotinylated SNA from Vector Laboratories.
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10

Quantifying IgG Desialylation by Lectin Staining

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Lectin staining was performed as previously described [19 (link)]. Sambucus nigra agglutinin (SNA) specific for α2,6-linked sialic acid was used to determine the efficiency of IgG desialylation. Desialylated and untreated IgG (1 µg) from healthy donors and HT samples were separated on 10% SDS-PAGE stain free gels (Bio-Rad) in reducing conditions, followed by the electrotransfer onto a PVDF membrane (Millipore). The membranes were blocked with Carbo Free Blocking Solution (Vector Lab., Burlingame, CA, USA), overnight at 4 °C and incubated with biotinylated SNA (Vector Lab., B1305) diluted 1:4000 in TBS with ions (50 mM Tris-HCl, 150 mM NaCl, 1 mM MgCl2, 1 mM CaCl2, 1 mM MnCl2, pH 7.5) for 1 h at RT. After washing in TBS, AP-conjugated ExtrAvidin (Sigma-Aldrich, E2636) diluted 1:4000 in TBS was applied. α2,6-sialylated IgG chains were visualized in AP colorimetric reaction as described above (Section 2.6).
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