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15 protocols using α tubulin sc 23948

1

Western Blot Analysis of c-MYC and α-Tubulin

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Cultured cells were harvested in icecold PBS and lysed in Lämmli buffer followed by sonification (30’’ On-OFF cycle, 15 minutes). Thirty to 50 μg of total protein was loaded into 10% or 12% SDS-PAGE gels and electrophoretically transferred onto polyvinylidene difluoride membrane (PVDF Bio-Rad Laboratories GmbH, Munich, Germany) by using a semidry blotting system (Trans-Blot®Turbo blotting System, Bio-Rad). After that, the membrane was blocked in 5% (w/v) defatted powdered milk/Tris–buffered saline 0.1% Tween 20 for 1, 5 h at room temperature and incubated overnight with the desired primary antibodies at 4°C. After rinse, the membrane was incubated for 1 h at RT with the corresponding secondary antibodies conjugated with horseradish peroxidase (Santa Cruz Biotechnology). Finally, protein visualization was performed using Western Lightning Plus ECL (Perkin Elmer Inc., Waltham, MA, USA) chemiluminescent reagent.
The following primary and secondary antibodies were used: c-MYC [9E10] Chip Grade (ab32) (Abcam, Cambridge, UK), and α-Tubulin (sc 23948), (Santa Cruz Biotechnology, CA, USA), Goat Anti-Rabbit IgG (H+L) (# 111-035-045) (Jackson ImmunoResearch, Suffolk, UK); Goat Anti-Mouse IgG + IgM (H+L) (#115-035-044) (Jackson ImmunoResearch, Suffolk, UK).
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2

Quantification of Epithelial-Mesenchymal Markers

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The MMP2 (#40994), SMAD4 (#38454), Snail (#3895), and Slug (#9585) antibodies were obtained from Cell Signaling Technology. The α-tubulin (#sc-23948) antibody was obtained from Santa Cruz Biotechnology. The recombinant human GDF-8 and TGF-β1 were obtained from R&D systems. The SB431542 was obtained from Sigma.
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3

Investigating mTOR and GSK3 Signaling

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All mTOR kinase inhibitors, the GSK3 inhibitor SB216763, the proteasome inhibitor MG132, the protein synthesis inhibitor cycloheximide (CHX) and the antibodies against GSK3α/β, phospho-GSK3α/β (Ser21/9), phospho-Akt (Ser473), Akt, rictor and raptor were the same as described previously 22 (link). The GSK3 inhibitor CHIR99021 was purchased from LC laboratories (Woburn, MA). BKM120 was supplied by Novartis Pharmaceuticals Corporation (East Hanover, NJ). API-1 (NSC177233) was obtained from the National Cancer Institute (Bethesda, MD). MK2206 was purchased from Active Biochem (Maplewood, NJ). Perifosine was supplied by Keryx Biopharmaceuticals, Inc (New York, NY). Oil Red O was purchased from Sigma Chemical Co. (St. Louis, MO). SREBP1 (sc-13551), FASN (sc-55580) and α-tubulin (sc-23948) antibodies were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA). ACC antibody (#3662) was purchased from Cell Signaling Technology, Inc. (Beverly, MA). Polyclonal Sin1 antibody (A300-910A) was purchased from Bethyl Laboratories, Inc. (Montgomery, TX).
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4

Western Blot Analysis of Cell Cycle Proteins

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Cells were lysed with RIPA buffer supplemented with a protease inhibitor cocktail (Sigma-Aldrich, Burlington, MA, USA), and protein concentrations in the extracts were measured using the BCA assay (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of proteins were separated by SDS–polyacrylamide gels and transferred onto PVDF membranes (Millipore-Sigma). The membrane was blocked with 5% non-fat dry milk in Tris-buffered saline containing 0.04% Tween-20 (TBST) and incubated with primary antibodies overnight at 4 °C. Antibodies against Cyclin A (#4656), Cyclin B (#4138), γH2AX (#9718), p-Chk1 (#2348), and p-Chk2 (#2197) were purchased from Cell Signaling Technology (Danvers, MA, USA), while PARP (sc-7150), p53 (SC-126), GAPDH (SC-32233), β-actin (SC-130657) and α-Tubulin (SC-23948) were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). The antibody against TONSL (ab101898) was purchased from Abcam (Cambridge, UK). The membranes were then washed with TBST and incubated with horseradish peroxidase-conjugated secondary antibodies (Jackson Immuno Research, Philadelphia, PA, USA) for 1 h at room temperature. After washing with TBST, the immunoreactive bands were detected using ECL and visualized on X-ray films or with an Image 680 LAS (GE healthcare, Amersham, UK) imaging system.
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5

Protein Extraction and Western Blot Analysis

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The cell lysates were prepared as described previously [20 (link)]. Briefly, the Tris-based buffer containing phosphatase inhibitors and protease inhibitors (Roche, Basel, Switzerland) was applied and cleared with centrifugation. The protein in soluble fractions was quantified using a BCA kit (Thermo) and standard western blotting was performed using PVDF membrane (Merk Millipore, Boston, MA, USA). The antibodies used were as follows: α-tubulin (sc-23948) and PARP1/2 (sc-7150) were purchased from Santa Cruz (Santa Cruz, CA, USA). SCD1 (ab19862) was purchased from Abcam (Cambridge, UK). Cleaved active caspase-3 (#9661) was purchased from Cell Signaling Technology (Danvers, MA, USA). The secondary antibodies conjugated with horseradish peroxidase were purchased from Cell Signaling Technology. The signals were visualized using SuperSignal® Femto (Thermo) and X-ray films (Agfa, Mortsel, Belgium).
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6

Immunofluorescence Staining of Keratinocytes

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Keratinocytes were grown on glass coverslips, fixed with 3,8% formaldehyde in PBS for 10 minutes and permeabilized with cold methanol for 5 minutes or fixed with cold methanol for 10 minutes. Paraffin-embedded skin sections were prepared following convential procedures. Samples were incubated for 1 hour (cells) or overnight (sections) in a wet chamber with antibodies against keratin 10 (sc-23877), phospho-histone H3 (sc-8656-R), cyclin A (sc-56299), cyclin E (sc-198), αTubulin (SC-23948) (all from Santa Cruz, CA, USA), involucrin (I-9018, Sigma-Aldrich, Inc), keratin 1 (PRB-149P, Covance, Vienna, VA, USA) or Ki67 (ab16667, Abcam, Cambridge, UK). Then, primary antibodies were revealed with Alexa Fluor-conjugated goat anti rabbit or anti mouse antibodies (Jackson ImmunoResearch, PA, USA). Samples were then incubated with 0.2 µg/ml DAPI (Vector Lab, Burlingame, CA). Coverslips were mounted with Prolong Gold Antifade Reagent (ThermoFisher Scientific, Waltham, MA) and cells were visualized and photographed with a Zeiss fluorescent microscopy. Immunofluorescence staining was scored by counting 400 cells.
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7

Comprehensive Proteomic Analysis of Mitochondrial Dynamics

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Cells were lysed with RIPA buffer (25 mM Tris, pH7.4; 150 mM NaCl; 1% NP-40; 0.5% sodium deoxycholate and 0.1% SDS) supplemented with protease inhibitors (Roche, 4693132001) and phosphatase inhibitors (Roche, 4906845001) and sonicated with Bioruptor Plus at High setting. Cell lysates were resuspended in 4× sample buffer (200 mM Tris, pH 6.8; 8% SDS; 40% glycerol; 0.4% bromophenol blue and 20% 2-mercaptoethanol) and heated at 95 ℃ for 5 min. Antibodies used were OPA1 (67589), DRP1 (8570), Mitofusin-1 (14793), Mitofusin-2 (11925), H2AX (2595), γH2AX (2577), H3 (9715), H3K4me1 (5326), H3K4me3 (9751), IRF3 (11904), p-IRF3 (S396) (29047), TBK1 (3504), p-TBK1 (S172) (5483), p65 (8242) and p-p65 (S536) (3033) from Cell Signaling; H3K4me2 (39679), H3K9me1 (39887), H3K9me2 (39683), H3K9me3 (39765), H3K27me1 (61015), H3K27me2 (39919), H3K27me3 (39155), H3K36me1 (61351), H3K36me2 (39255), H3K36me3 (61101) from Active Motif; α tubulin (sc-23948) from Santa Cruz; Lamin A/C (GTX101127) from GeneTex. α tubulin was in 1:20000 dilution. For Lamin A/C and all histone-related antibodies, antibodies were used in 1:5000 dilution. Others were in 1:1000 dilution.
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8

Antibody Panel for TGF-β Signaling

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The SPARC (#5420), p-SMAD2 (#3108), p-SMAD3 (#9520), SMAD2 (#3103), SMAD3 (#9523), SMAD4 (#38,454), Snail (#3895), Slug (#9585) antibodies were purchased from Cell Signaling Technology. The aromatase antibody was purchased from Bio-Rad Laboratories (#MCA2077). The VEGF antibody was purchased from Thermo Fisher Scientific (#MA5-13182). The α-tubulin (#sc-23948) antibody was purchased from Santa Cruz Biotechnology. The SPARC (#8725) antibody for immunohistochemistry was purchased from Cell Signaling Technology. The recombinant human TGF-β1 was obtained from R&D systems. The SB431542 was obtained from Sigma.
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9

Investigating mTOR and GSK3 Signaling

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All mTOR kinase inhibitors, the GSK3 inhibitor SB216763, the proteasome inhibitor MG132, the protein synthesis inhibitor cycloheximide (CHX) and the antibodies against GSK3α/β, phospho-GSK3α/β (Ser21/9), phospho-Akt (Ser473), Akt, rictor and raptor were the same as described previously 22 (link). The GSK3 inhibitor CHIR99021 was purchased from LC laboratories (Woburn, MA). BKM120 was supplied by Novartis Pharmaceuticals Corporation (East Hanover, NJ). API-1 (NSC177233) was obtained from the National Cancer Institute (Bethesda, MD). MK2206 was purchased from Active Biochem (Maplewood, NJ). Perifosine was supplied by Keryx Biopharmaceuticals, Inc (New York, NY). Oil Red O was purchased from Sigma Chemical Co. (St. Louis, MO). SREBP1 (sc-13551), FASN (sc-55580) and α-tubulin (sc-23948) antibodies were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA). ACC antibody (#3662) was purchased from Cell Signaling Technology, Inc. (Beverly, MA). Polyclonal Sin1 antibody (A300-910A) was purchased from Bethyl Laboratories, Inc. (Montgomery, TX).
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10

Antibody Analysis of EGFR Signaling

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The p-EGFR (#3777), p-HER2 (#2243), HER2 (#2165), p-HER4 (#4757), HER4 (#4795), p-ERK1/2 (#9106), ERK1/2 (#9102), phospho-AKT (#9271), and AKT (#9272) antibodies were purchased from Cell Signaling Technology. The EGFR (#sc-373746) and α-tubulin (#sc-23948) antibodies were purchased from Santa Cruz Biotechnology. The recombinant human HB-EGF was obtained from R&D systems. The AG1478, AG825, and LY294002 were obtained from Sigma. The U0126 was obtained from Cayman.
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