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30 protocols using openlab cds software

1

Antibody-Drug Conjugation Protocol

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Antibody-drug conjugation was performed using methods described previously (18 (link),19 ). Briefly, M25 IgG1 was partially reduced with 2 equivalents of Tris(2-carboxyethyl) phosphine hydrochloride (TCEP, Thermo Fisher Scientific) at 37 °C for 2h. The mixture was purified by Zeba spin column (Pierce/Thermo Fisher Scientific), and buffer-exchanged into PBS with 5 mM EDTA. Six equivalents of maleimidocaproyl valine-ciytulline-p-aminobenzoyloxycarbonyl- monomethyl auristatin phenylalanine (mcvcpabMMAF, ref. (18 (link),19 )) or maleimidocaproyl-valine-citrulline-p-aminobenzoyloxycarbonyl-monomethyl auristatin E (mcvcpabMMAE, Concortis) were incubated with TCEP-reduced M25 IgG at RT for 1h. Excess mcvcpabMMAF or mcvcpabMMAE was removed by running twice through the Zeba spin column. Purified ADCs were analyzed by HIC-HPLC with infinity 1220 LC System (Agilent). The drug-to-antibody ratio (DAR) is estimated from area integration using the OpenLab CDS software (Agilent).
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2

Quantification of EFVF by UHPLC-DAD

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The chromatographic analysis of EFVF was performed using a 1290 infinity UHPLC- DAD system (Agilent Technologies, Santa Clara, CA, USA) equipped with an analytical column (Luna Omega C18, 2.1 × 50 mm, 1.6 μm, Phenomenex, Torrance, CA, USA). The extract or STDs were analyzed using a sequential gradient mobile phase system from a 95:5 mixture to a 40:60 mixture of 0.1% (v/v) formic acid (mobile phase A) and acetonitrile (mobile phase B) within 40 min at a flow rate of 0.2 mL/min. The DAD signals of EFVF and STDs were detected at 280 nm, and the spectral scanning was performed at a wavelength range of 200–400 nm. The column and auto-sampler temperature were set at 40 and 4 °C, respectively. Each constituent from EFVF was identified by comparing the retention time (tR) and specific DAD spectrum pattern of each peak in the EFVF with those of the corresponding STD. The chromatographic data were processed by the Agilent OpenLAB CDS software
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3

Recombinant Ameloblastin Protein Production

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Recombinant mouse ameloblastin (rAmbn) and the variant delta 5 (AmbnΔ5), which lacks the sequence encoded by Exon 5, were expressed and purified following the method described in our recent publication (Su et al. 2019b (link)). Briefly, Ambn was expressed in Escherichia coli with Histidine (His), Thioredoxin (Trx), and S-tags in BL21, using pET-32a plasmid (Novagen) with inserted mouse Ambn gene (GenBank No. AAB93765.1). The expressed protein was purified using Nickel affinity chromatography (Ni-NTA Agarose, Qiagen), followed by dialysis through 10K MWCO dialysis membrane (SnakeSkin™ Dialysis Tubing, ThermoFisher). His-, Trx-, and S-tags were cleaved by Enterokinase (light chain, New England Biolabs), and were removed by a reversed phase High Performance Liquid Chromatography (HPLC) system (Varian Prostar system with Agilent OpenLab CDS software). Phenomenex C4 column (10 × 250 mm, 5 μm) was used, and proteins were eluted with an increasing gradient of 32–72% acetonitrile over 80 min, at a flow rate of 1.5 ml/min. Collected proteins were lyophilized and characterized with SDS-PAGE. The heat denaturation of rAmbn was performed by heating rAmbn at 95°C for 10 min.
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4

Metabolite Quantification in Microbial Cultures

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0.3 mL samples were taken every 20 min from 1 to 3 hr after inoculation. To separate the cells from the medium, the samples were centrifuged at maximum speed for 3 min, the supernatant transferred onto a filter column (SpinX, pore size 0.22 µm), again centrifuged at maximum spend and the flow through was further analyzed. The glucose, pyruvate, glycerol, acetate and ethanol concentration was detected using an Agilent 1290 LC HPLC system equipped with a Hi-Plex H column and 5 mM H2SO4 as eluent at a constant flow rate of 0.6 mL min−1. The injection volume was 10 µL and the column temperature was kept constant at 60°C. Glucose, glycerol, ethanol and acetate were detected by refractive index and pyruvate by UV (constant wave length of 210 nm) and the respective concentrations were determined using an external standard with known concentrations. The data were analyzed using the Agilent Open Lab CDS software.
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5

HPLC Analysis of Organic Acids and Sugars

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Organic acids as well as fructose and maltotriose were detected and quantified by HPLC, according to the method described by Marsili et al. (1981) (link) with the following modifications. Samples (1.00 g) were mixed with water (MilliQ), 0.5 M H2SO4 and acetonitrile in a MultiRS-60 BIOSAN turner (Montebello Diagnostics A/S, Oslo, Norway) operated at 30 rpm for 30 min. Samples were centrifuged for 15 min at 1470 × g using a Kubota 2010 centrifuge (Kubota Corporation, Tokyo, Japan) prior to filtration through 0.2 μm PTFE membrane (Acrodisc CR 13 mm Syringe Filter, PALL, United Kingdom). Organic acids were separated on an Aminex HPX-87H column (Bio-Rad Laboratories, Hercules, CA, United States) with 0.05 M H2SO4 as mobile phase and a flow rate of 0.4 mL/min. The column, operated at 30°C, was connected to a 1260 Infinity HPLC instrument (Agilent Technologies, Singapore) with pump, autosampler, column oven, RI-detector (refractive index, used for acetic acid, fructose and maltotriose) and diode array detector-ultra violet (DAD-UV) detector, used for the other organic acids. Openlab CDS software (Agilent Technologies) was used to operate the system and detection and quantification were done according to calibration with external standards. Maltose, sucrose and glucose were quantified by the K-MASUG enzymatic kit (Megazyme, Wicklow, Ireland), used according to the instructions.
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6

HPLC Analysis of Praziquantel

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High-Performance Liquid Chromatography Agilent 1260 Infinity II HPLC system (Agilent Technologies, Inc.) equipped with Model 1260 quaternary pump, Model 1260 Hip ALS autosampler, Model 1290 thermostat, Model 1260 TCC control module, and Model 1260 diode array detector was utilized as described previously. Data processing and analysis was performed using OpenLab CDS software (Agilent Technologies, Inc.). For praziquantel, chromatographic isocratic separation was carried out on an Agilent Zorbax Eclipse XDB C-18 4.6 × 150 mm analytical column with 5 μm particles, maintained at 40 °C. The optimized mobile phase consisted of MilliQ grade water and acetonitrile at a flow rate of 1 ml/min over a 5 minutes run time. Separation was achieved using a gradient elution profile starting at 50% water and 50% acetonitrile at minute 0 which ended at 30% water and 70% acetonitrile at 3 minutes. The injection volume was 5 μl, and the selected ultraviolet (UV) detection wavelength was 217 nm.
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7

HPLC Quantification of Ibuprofen API

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A validated reverse phase HPLC methodology was used to determine the content of the API in the acceptor medium. Detection was achieved using a spectrophotometer at λ = 264 nm. The flow rate of the eluent was set to 1.0 mL min−1 and all injections of 50 μl. Data was collected and analyzed using Agilent Technologies OpenLAB CDS software (version C.01.07 [27 (link)]). Mobile phase solvents used were HPLC grade and consisted of mobile phase (a) 100% v/v water, 0.1% TFA; mobile phase (b) 100% v/v MeCN. The calibration curve for ibuprofen was linear at concentrations ranging from 1 to 50 μg mL−1. The accuracy of the assay was tested by triplicate injection of five samples within 50–200% range of nominal concentration (50 μg mL−1), and subsequent calculation of the recovery percent. Estimated average values of recovery and RSD were found to meet accuracy criteria of 100 ± 2% and < 1%, respectively. The limit of detection (LOD) was defined as lowest amount of ibuprofen which can be reproducibly detected as the signal which is three times higher than the baseline and was found to be 200 ng mL−1. The limit of quantification (LOQ) was defined as the lowest amount of analyte which reproducibly gives signal-to-noise ratio (SNR) of 10/1 and was found to be 600 ng mL−1.
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8

Size Exclusion HPLC Analysis of Biomolecules

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Size exclusion high-performance liquid chromatography (HPLC) analysis was performed on an Agilent 1260 HPLC system controlled using OpenLab CDS software (Agilent Technologies). The analysis was performed using an AdvanceBio SEC column (Agilent Technologies, 4.6 × 300 mm, 300 Å, 2.7 µm) and AdvanceBio SEC guard column (Agilent Technologies, 4.6 × 50 mm, 300 Å, 2.7 µm). The column was operated at a flow rate of 0.25 mL/min and ambient temperature. The mobile phase buffer was 150 mM sodium phosphate (Sigma-Aldrich), pH 7.0. Total method run time was 30 min and sample injection volumes were 10 µL. A diode array detector was set for absorbance detection at 214 nm. Data analysis was completed using Agilent’s OpenLab CDS Data Analysis.
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9

HPLC Analysis of Wheat Protein Fractions

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A Chromaster High Performance Liquid Chromatograph (HPLC) (Hitachi, Tokyo, Japan) with EZChrom Elite Ver. 3.2.1 software, an autosampler, and a BIOshell™ A400 Protein column C18 (L × I.D. 15 cm × 3 mm, 3.4 μm particle size, Supelco, Bellefonte, PA, USA) were used. The mobile phase consisted of trifluoroacetic acid (TFA) (0.1%, v/v) in water (A) and TFA (0.1%, v/v) in acetonitrile (B).
The extraction of albumins/globulins, gliadins, and glutenins was carried out according to Pronin et al. [11 (link)]. For the determination of wheat protein fractions, the gradient profile was 0 min, 0% B; 0.5 min, 20% B; 7 min, 60% B; 7.1–11 min, 90% B; and 11.1–17 min, 0% B for albumins/globulins and 0 min, 0% B; 0.5 min, 24% B; 20 min, 56% B; 20.1–24.1 for gliadins and glutenins. Flow and temperature were 0.2 mL/min and 60 °C, respectively. The injection volume was 10 μL for gliadins and 20 μL for albumins/globulins and glutenins. Detection was performed at 210 nm using a diode array detector (HPLC-DAD 300). Data were processed using OpenLAB CDS software (Agilent Technologies, Santa Clara, CA, USA). Prolamin Working Group (PWG)-gliadin (2.5 mg/mL in 60% ethanol) was used for external calibration and calculation of protein content [23 (link)].
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10

Peptide Fingerprinting via HPLC

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The peptide fingerprint was obtained via reversed-phase High-Performance Liquid Chromatography (HPLC), as described by Teng et al. [13 (link)]. Chromatograms were generated using Agilent OpenLab CDS software.
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