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2 methylbutane

Manufactured by Carl Roth
Sourced in Germany

2-methylbutane is a branched-chain alkane with the chemical formula C₅H₁₂. It is a colorless, volatile, and flammable liquid. 2-methylbutane is commonly used as a laboratory reagent and in some industrial applications.

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7 protocols using 2 methylbutane

1

Murine DRG Tissue Analysis Protocol

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For DRG neuronal cell culture, immunohistochemistry, and gene expression analysis of the murine DRG tissue, whole DRG from the GLA KO and WT mouse groups were dissected. The mice were euthanized using deep isoflurane anesthesia (CP-Pharma, Burgdorf, Germany). All available DRG were dissected according to [78 (link)] and collected in PBS on ice for neuronal cell culture. L3 and L5 DRG were collected for qRT PCR analysis, while L4 DRG were embedded into an optimal cutting temperature medium (TissueTek®, Sakura Finetek, Staufen, Germany) for the immunohistochemistry experiments. The tissue was flash-frozen in liquid-nitrogen-cooled 2-methylbutane (Carl Roth, Karlsruhe, Germany) and stored at −80 °C until further processing. For immunolabeling, the L4 DRG were cut into 10 µm cryosections for cell counting analysis and 50 µm cryosections for blood vessel analysis using a cryostat (Leica Microsystems, Wetzlar, Germany). Three cryosections per mouse were collected per slide for further analysis.
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2

Dissection and Processing of Murine Dorsal Root Ganglia

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Mice were euthanized in deep isoflurane anesthesia (CP-Pharma, Burgdorf, Germany) and exsanguinated. We dissected lumbar (L)3-5 DRG, while L3 and L5 were used for quantitative real-time polymerase chain reaction (qRT PCR) analysis and L4 was used for immunohistochemistry (IHC). L3 and L5 DRG were collected in tubes and flash-frozen in liquid nitrogen-cooled 2-methylbutane (Carl Roth, Karlsruhe, Germany). L4 DRG were embedded in optimal cutting temperature medium (TissueTek®, Sakura Finetek, Staufen, Germany) and flash-frozen in liquid nitrogen-cooled 2-methylbutane. Tissue was stored at −80 °C until further processing.
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3

Perfusion of Rat Brain for Cryoprotection

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Adult rats of different ages were first bemused in Isoflurane (Abbott GmbH and Co. KG, Wiesbaden, Germany) and then deeply anesthetized with a mix of 20 mg/ml Xylavet (CO-pharma, Burgdorf, Germany) and 100 mg/ml Ketamin (Inresa Arzneimittel GmbH, Freiburg, Germany) in 0.9% NaCl (B/BRAUN, Melsungen, Germany). Afterwards the heart was made accessible by opening the thoracic cavity. Subsequently a needle was inserted into the protrusion of the left ventricle and the atrium was cut open with a small scissor. Thereby the blood could be exchanged with PBS. Following the exchange of blood, the animals were perfused with freshly made 4% PFA. Following fixation, the brain was dissected from the head and further incubated in 4% PFA for 24 hr at 4°C. Subsequently the brain was transferred to 15% sucrose at 4°C for cryo-protection. After the tissue sank down to the bottom of the tube, it was transferred into 30% sucrose and incubated again until sinking to the bottom. Afterwards the brains were frozen using 2-methylbutane (Carl-Roth, Karlsruhe, Germany) cooled with dry ice to −60°C and stored at −20°C until cut with a cryostat.
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4

Neuroinflammatory Evaluation via IBA-1 Immunostaining

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Twenty-four hours after the behavioral assessment, animals were euthanized with an intraperitoneal injection of pentobarbital (55 mg/kg, Exagon®, Med’Vet, France) for neuroinflammatory evaluation through ionized calcium-binding adapter molecule 1 (IBA-1) immunofluorescence staining. The procedures were similar to those we previously described50 ,51 (link). After, mice were transcardially perfused with 0.9% NaCl, followed by 4% paraformaldehyde fixative (PFA, Roth®, Karlsruhe, Germany) dissolved in 0.1 M phosphate buffer (PB, pH 7.4). Extracted brains were postfixed overnight at 4 °C in the same fixative and then cryoprotected for 24 h at 4 °C by immersion in a 15% sucrose solution (D(+)- Saccharose, Roth®, Karlsruhe, Germany) in a 0.1 M PB. Finally, the brains were rapidly frozen via immersion in isopentane (2-methylbutane, Roth®, Karlsruhe, Germany) and sliced into serial coronal 30-µm-thick sections.
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5

Cryoprotective Tissue Sectioning and Nissl Staining

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Brains were collected and fixed in a 4% paraformaldehyde fixative solution in 0.1 M phosphate buffer (pH 7.3-7.4) cryoprotected in 30% sucrose and then quickly frozen in 2-methylbutane (Roth, Karlsruhe, Germany) cooled with dry ice to −40°C. Coronal serial sections (30 µm) were collected and stored at −80°C. Nissl stain was performed with thionin and photographed at 1.253× with a Sony DFW-X700 digital camera (Sony, Tokyo, Japan) coupled to an Olympus BX60 light microscope (Olympus, Hamburg, Germany).
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6

CCl4-Induced Liver Injury Model in Mice

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All animal protocols complied with the guidelines for animal care approved by the German Animal Care Committee (Landesamt für Naturschutz, Umwelt und Verbraucherschutz Nordrhein-Westfalen (LANUV) located in Recklinghausen, Germany; https://www.lanuv.nrw.de). Permit numbers for respective animal protocols are: 84-02.04.2012.A092 (approved 15 August 2012) for CCl4 injection experiments and 84-02.04.2015.A028 (approved 4 March 2015) for hepatocyte isolation from murine livers.
In our study, we used 6–8-week-old C57BL/6 wild type and Lcn2−/− mice to investigate CCl4-induced ER stress. To do so, we injected mice intraperitoneally with 0.8 mL CCl4/kg body weight diluted in mineral oil twice a week for eight consecutive weeks. Thereafter, the animals were euthanized. Blood was drawn by heart puncture and liver specimens snap-frozen in liquid nitrogen for later analysis. Frozen tissue sections were preserved in Tissue-Tek (Sakura Finetek Europe B. V., Alphen aan den Rijn, The Netherlands) solved in in ice-cold 2-methylbutane (Roth, Karlsruhe, Germany). The samples were stored at −80 °C, or alternatively fixed in 4% buffered paraformaldehyde for subsequent immunohistological stainings.
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7

Spinal Cord Tissue Preparation and Immunohistochemistry

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Mice were anesthetized by intraperitoneal injection of 16% sodium pentobarbital solution (Narcoren, Merial, Hallbergmoos, Germany, 5 µl/g body weight) and were transcardially perfused with 4% formaldehyde in 0.1 M sodium cacodylate buffer, pH 7.3. The spinal cord was removed two hours after fixing, post-fixed overnight at 4 °C and then immersed in 15% sucrose solution in 0.1 M cacodylate buffer, pH 7.3, for 1 day at 4 °C. Afterwards the tissue was frozen for 2 min in 2-methyl-butane (isopentane, Carl Roth, Karlsruhe, Germany) pre-cooled to −80 °C. For sectioning, the spinal cord segment was attached to a cryostat specimen holder using TissueTek (Sakura Finetek Europe, Zoeterwoude, The Netherlands). Serial transverse or parasagittal sections of 25 μm thickness were cut on a cryostat (Leica CM3050, Leica Instruments, Nußloch, Germany) and picked up on Super Frost Plus glass slides (Roth, Karlsruhe, Germany). Sampling of sections was always done in a standard sequence so that four sections 250 μm apart were present on each slide. Immunohistochemistry was performed as described earlier61 (link).
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