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8 protocols using q sepharose

1

Purification of Recombinant Hsp70 Protein

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Recombinant Hsp70 was expressed in BL21(DE3) and harvested by lysis in buffer A (20 mM Hepes, pH 7, 1 mM EDTA, 1 mM DTT, 0.5 mM PMSF) supplemented with 25 mM KCl. Hsp70 was purified by sequential chromatography first on Q-Sepharose (Amersham Pharmacia Biotech) and then on ATP agarose (SigmaAldrich). The resulting protein was precipitated with 75% (NH4)2SO4 in the presence of 10 mM EDTA to promote the dissociation of ATP. Hsp70 was further purified by size exclusion chromatography on Superose S-300 (Amersham Pharmacia Biotech) in buffer A containing 100 mM KCl, followed by chromatography on Q-Sepharose. Hsp70 was eluted with a 25–250-mM KCl linear gradient in buffer A (200 ml, 1 ml/min). The molar extinction coefficient, ε1% = 6.2, was used to quantify Hsp70 (Chang et al., 2002).
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2

Expression and Purification of Hdm2-ABD

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The Arf binding domain of Hdm2 (residues 210–304) with an N-terminal polyhistidine tag was expressed in Escherichia coli (E. coli) BL21 (λDE3) from the pET28a expression vector (Novagen) as described previously [5 (link)]. 13C/15N-labeled Hdm2-ABD was expressed using MOPS-based minimal media [8 (link)] containing [13C] D-glucose and 15NH4Cl (Cambridge Isotope Laboratories). Cultured cells were harvested by centrifugation and lysed in 25 mM Tris HCl (pH 8.0), 500 mM NaCl, 5 mM β-mercaptoethanol (BME), and protease inhibitor cocktail (Sigma) by sonication. Lysates were clarified by centrifugation and Urea was added to the clarified extract to a concentration of 3 M. His-tagged Hdm2-ABD was purified by Ni2+-NTA affinity chromatography and eluted with buffer containing 6 M urea and 0.5 M Imidazole. Fractions containing Hdm2-ABD were dialyzed against 25 mM Tris HCl (pH 8.0), 150 mM NaCl, 5 mM BME and treated with thrombin to cleave the His tag. Cleaved Hdm2-ABD was buffer exchanged by dialysis into 25 mM sodium phosphate (pH 7.0), 50 mM NaCl and further purified using anion-exchange chromatography (Q Sepharose; Amersham Pharmacia Biotech, Inc.) using a linear gradient of 0.05′1 M NaCl over 0.1 L. NMR experiments were performed at a protein concentration of 1 mM in 25 mM Sodium Phosphate pH 6.0, 10 mM NaCl, 0.03 % NaN3, and 10% D2O.
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3

Cloning and Purification of HiGulD and HiUxuA

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The genes HiGulD (Uniprot ID Q57517) and HiUxuA (Uniprot ID P44488) were amplified from H. influenzae strain Rd KW20 (ATCC 51907) genomic DNA. PCR was performed using KOD Extreme DNA Polymerase (Novagen) according to the manufacturer’s guidelines. The conditions were: 2 min at 95°C, followed by 40 cycles of 20 s at 95°C, 20 s at 66°C, and 20 s at 72°C. Primers are listed in Supplementary file 7. The amplified fragment was cloned into the C-terminal TEV cleavable 10x-Histag containing vector pNYCOMPS-LIC-TH10-ccdB (C-term) such that the tag is out of frame (pNYCOMPSC-tagless), by ligation-independent cloning (Aslanidis and de Jong, 1990 (link); Savitsky et al., 2010 (link)).
The pNYCOMPSC-tagless HiGulD and HiUxuA constructs were transformed into E. coli BL21 (DE3) for expression. Both HiGulD and HiUxuA were purified from 1 L of culture using DEAE Sepharose, Q‐Sepharose, and phenyl-Sepharose columns (all Amersham Biosciences) as previously described (Wichelecki et al., 2014 (link)). Proteins were concentrated to 15 g/L and 6 g/L, respectively, flash frozen in liquid nitrogen, and stored at −80°C.
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4

Recombinant TTR Expression and Purification

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Expression of TTR was performed as described previously [28 (link)]. Briefly, after transformation of the plasmid into Escherichia coli BL21, the cells were grown until an OD600 of 0.6, followed by induction with 0.4 mM isopropyl thiogalactopyranoside at 37°C. Cells were harvested after 18 h and lysed by sonication. The cell debris was removed by centrifugation at 20,000 × g for 30 min, and the supernatant was collected and loaded on an anion exchange column (Q-sepharose, Amersham Biosciences) and eluted with a NaCl gradient. Fractions containing TTR were combined and concentrated using Centriprep filter units with Ultracel YM-10 membranes (Millipore). The concentrate was loaded on a gel filtration column (Superdex G75-16/60, Amersham Biosciences) equilibrated with PBS.
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5

Chitosan-Tripolyphosphate Nanoparticle Synthesis

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The polymer chitosan (low molecular weight (% deacetylation 75% to 85%, MW~50 kDa), Cat. No.: 448869) and sodium tripolyphosphate (Cat. No.: 238503) were purchased from Sigma-Aldrich, USA. Q-Sepharose was purchased from Amersham, UK. Ultrapure water was obtained with MilliQ equipment (Waters, USA). All other chemicals and reagents were of analytical grade.
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6

Overexpression and Purification of Brugia malayi Protein

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The Brugia malayi pRSETB-TRX construct was overexpressed in E. coli (GJ1158) strain using NaCl induction and the recombinant protein was purified by ion-exchange chromatography using Q-sepharose (Amersham Pharmacia Biotech) under non-denaturing conditions [7 (link)].
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7

Immunoassay Development for Heroin Detection

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Monoacetylmorphine (MAM), 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC), sulfo N-hydroxysuccinimide (sulfo-NHS), bovine serum albumin (BSA), Ovalbumin (OVA), complete Freund’s adjuvant (CFA), incomplete Freund’s adjuvant (IFA), horseradish peroxidase (HRP), goat anti-rabbit IgG-HRP, 3,3',5,5'-Tetramethylbenzidine (TMB) substrate were purchased from Sigma Chemical Co. Chandigarh, India. HRP labeling kit was purchased from (Thermofisher Scientific, USA). Standard heroin, morphine, and codeine samples were provided by the Central Forensic Science Laboratory (CFSL), Chandigarh, India. Q-Sepharose, Protein-A Sepharose, and Sepharose CL 6B were procured from Amersham Biosciences, Chandigarh, India. Super signal west picochemiluminescence substrate was purchased from Pierce Biotechnology, Chandigarh, India. Polystyrene ELISA plates were procured from NUNC, Chandigarh, India.
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8

Purification and Expression of Transthyretin

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Expression of TTR was performed according to a previously published protocol [29 (link)]. Briefly, after transformation of the plasmid into Escherichia coli BL21, the cells were grown until an OD600 of 0.6 followed by induction with 0.4 mM isopropyl thiogalactopyranoside at 37°C. After 18 hours, cells were harvested and lysed by sonication. Cell debris was removed by centrifugation at 20,000 × g for 30 min, and the supernatant was collected and loaded onto an anion exchange column (Q-sepharose, Amersham Biosciences) and eluted with a NaCl gradient. The fractions containing TTR were concentrated using Centriprep filter units with Ultracel YM-10 membranes (Millipore) and loaded onto a gel filtration column (Superdex G75-16/60, Amersham Biosciences) equilibrated in minimum essential medium (MEM). The purified protein solution was supplemented with 2 mM L-glutamine, 100 units/mL penicillin, 100 μg/mL streptomycin (Gibco), and 1% non-essential amino acid solution before incubation with SH-SY5Y cells.
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