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12 protocols using rtx wax capillary column

1

Effects of Statins on Gut Microbiota

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Atorvastatin and rosuvastatin (pharmaceutical secondary standard, certified reference material, Sigma-Aldrich Co., St. Louis, MO, USA)) were utilized for the in-vitro experiments. Parabacteroides merdae, Bifidobacterium longum subsp. longum and Anaerostipes hadrus were obtained from the Institute of Microbiology, Chinese Academy of Sciences. The YCFA medium was freshly prepared according to the previous studies and autoclaved at 121 °C for 15 min 41 (link). The three strains described above were cultured anaerobically at 37 °C in YCFA medium containing 0.2% DMSO, or Atorvastatin (dissolved in 0.2% DMSO, final concentration: 10 μM and 100 μM) or rosuvastatin (dissolved in 0.2% DMSO, final concentration: 8 μM and 80 μM). The optical density (OD600) was measured for the bacterial growth curve. One milliliter of culture samples at logarithmic phase was mixed with one-milliliter of ethyl acetate, and the supernatants after extraction were used for SCFA analysis using a GCMS-QP2010 Ultra with an autosampler (Shimadzu Corporation, Japan) and an Rtx-wax capillary column (60 m×0.25 mm×0.25 μm, RESTEK, USA) as previous described 42 (link). The Student's t test was used for the difference comparison and GraphPad Prism7 was used for data visualization.
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2

Volatile Compound Profiling by SPME-GC-MS

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Profiles of volatile compounds were obtained using a previously described method with minor modifications (Tomita, et al., 2018 (link)). Briefly, 3 mL of sample was transferred to a 20-mL screw cap vial (Shimadzu GLC Ltd., Tokyo, Japan) and stored at 4 °C until use. Then, samples were placed in an agitator unit at 50 °C for 10 min, and volatile components were extracted for 20 min onto a 2-cm long DVB/CAR/PDMS fiber (Sigma-Aldrich, St. Louis, MO, USA). The agitator unit was rotated at 250 rpm during extraction. Volatile compounds were desorbed from the fiber for 3 min at 230 °C in splitless mode and were resolved on an Rtx-WAX capillary column (60 m × 0.25 mm I.D. × 0.25 μm film thickness; Restek, Bellefonte, PA, USA) with helium as the carrier gas. The column temperature program was as follows: 40 °C for 5 min, then increased to 230 °C at 5 °C/min, and maintained at 230 °C for 5 min. Analyses were conducted in duplicate to confirm reproducibility. Detected peaks were annotated based on the mass spectrum similarity and retention index in the NIST 02 MS Library (National Institute of Standards and Technology, Gaithersburg, MD, USA).
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3

Quantifying Maize Root DIMBOA

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Maize root tissue (700–800 mg) was macerated by mortar and pestle in 2.00 mL of DI water. The resulting extract was centrifuged, combined with 1 mL of ethyl acetate (ETAC) and gently rocked for 1 min. The DIMBOA/ETAC organic layer was removed and the aqueous phase was re-extracted with 1 mL ETAC and combined with the first organic sample. An aliquot of the organic phase was injected into a Hewlett Packard 5890 A gas chromatograph equipped with a 30-m long, 0.53 mm inner diameter, 0.25 µm film thickness, Restek RTX-WAX capillary column and flame ionization detector. The program started with a 2 min hold at 70 °C and increased 10 °C min−1 to 250 °C. The injector temperature was 250 °C and the flame ionization detector temperature was 300 °C. The retention time of DIMBOA was ~24 min. Chromatographic peaks for DIMBOA were measured using PeakSimple chromatography software and quantified against authentic standards (Santa Cruz Biotechnology, Inc., TX, USA). Root DIMBOA values were reported as μmole DIMBOA gfw−1 tissue as a function of bacteria treatment.
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4

Volatile Compound Analysis of SBS Samples

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At 0, 7, 14 and 30 days, ten SBS of each lot were analyzed for the presence of volatile compounds, Volatile compounds were determined by SPME-GC-MS on Finnigan Trace DSQ (Thermo Scientific Corporation, USA) with a Rtx-Wax capillary column (length 30 m x 0.25 mm id.; film thickness 0.25 µm; Restek Corporation, USA), according to the method reported in Chiesa et al. (2006) . The volatile compounds were then identified by comparing the experimentally obtained spectra with the spectra available in the Commercial Wiley library (wiley registry 10 vers.) and a self-made library. The results represented the average of 10 samples of each of the three lots detected at each sampling time.
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5

Formaldehyde Analysis by GC-FID

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Precisa LS 220A SCS (Dietikon, Switzerland) analytical balance was used for weighing. GC-FID analysis was performed with Shimadzu GC-2010 Plus (Kyoto, Japon) equipped with Shimadzu AOC-5000 Plus (Kyoto, Japon) autosampler and Restek Rtx-Wax capillary column (30 m × 0.32 mm ID, 0.25 μm film thickness) (Pennsylvania, United States). For absorption measurements of the validation method, Shimadzu UV-1800 (Kyoto, Japon) spectrophotometer was used.
Formaldehyde standard, o-(2,3,4,5,6-Pentafluorobenzyl)hydroxylamine hydrochloride as derivatization reagent, 1-bromo-4-fluorobenzene (BFB) as internal standard were purchased from Sigma-Aldrich Chemie GmbH (Steinheim, Germany). Sodium chloride, potassium chloride, calcium chloride dihydrate, acetylacetone, acetic acid (glacial) were provided from Merck KGaA (Darmstadt, Germany).
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6

Formaldehyde Analysis by GC-FID

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Precisa LS 220A SCS (Dietikon, Switzerland) analytical balance was used for weighing. GC-FID analysis was performed with Shimadzu GC-2010 Plus (Kyoto, Japon) equipped with Shimadzu AOC-5000 Plus (Kyoto, Japon) autosampler and Restek Rtx-Wax capillary column (30 m × 0.32 mm ID, 0.25 μm film thickness) (Pennsylvania, United States). For absorption measurements of the validation method, Shimadzu UV-1800 (Kyoto, Japon) spectrophotometer was used.
Formaldehyde standard, o-(2,3,4,5,6-Pentafluorobenzyl)hydroxylamine hydrochloride as derivatization reagent, 1-bromo-4-fluorobenzene (BFB) as internal standard were purchased from Sigma-Aldrich Chemie GmbH (Steinheim, Germany). Sodium chloride, potassium chloride, calcium chloride dihydrate, acetylacetone, acetic acid (glacial) were provided from Merck KGaA (Darmstadt, Germany).
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7

Fatty Acid Profile Characterization via GC-FID

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The profile of FAs was assessed via converting the FAs into methyl esters (FAMEs) in reference to the method Ce 2-66 suggested by American Oil Chemists' Society [25] . Detection and quantification of FAMEs was executed based on the AOCS method Ce 1e-91 [25] . A gas chromatograph (model-GC-ATF, Shimadzu, Japan) equipped with a flame ionization detector (FID) and a rtx-wax capillary column (length 30 m, internal diameter 0.25 mm, film thickness 0.50 um; Restek, USA) was applied. The procedure conditions were: injection volume of 1 μL, injector temperature at 240 °C, FID detector temperature at 300 °C, split ratio of 1:150, helium as the carrier gas, the column's temperature programmed to 30 min at 120 °C followed by a boost to 220 °C at 20 °C/min. A reference standard FAME mix (Supelco Inc., Bellefonte, PA, USA) was examined through similar operating conditions with the purpose of specifying the peak identity. The outcomes were displayed as relative percentages of the total FAs.
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8

GC Quantification of Fatty Acid Esters

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FAIE were quantified by gas chromatography according to EN 14103 standard [91 ], with modifications. A mass of 50 mg of dry reaction sample was weighted in a vial and solubilized in 1.0 mL of a methyl heptadecanoate solution (1.0 mg/mL in heptane) as the internal standard. The analyses were carried out in a 7890-A Agilent chromatograph (Agilent Technologies, Santa Clara, CA, USA) using an Rtx-Wax capillary column (30 m × 0.25 mm × 0.25 μm, Restek Co., Bellefonte, PA, USA), injector temperature of 250 °C, and helium as carrier gas (19.91 psi, flow rate of 54 mL/min and split rate of 50:1). A volume of 1 μL of the sample was injected into the device, with the oven and FID detector set at 210 °C and 250 °C, respectively, and hydrogen, synthetic air, and nitrogen flow rates of 30, 400, and 25 mL/min, respectively.
The reaction yield (Y, in wt.%) for each sample was calculated by Equation (2),
Y [wt.%]=100·AiAstandard·Cstandard·Vstandardmsample
where Ai is the sum of chromatography areas of the chromatogram peaks at the retention time of isoamyl esters, Astandard is the area of methyl heptadecanoate peak, Cstandard is the mass concentration of methyl heptadecanoate solution in heptane, Vstandard is the volume of methyl heptadecanoate solution (1 mL, in heptane), and msample is the mass of reaction sample (~50 mg).
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9

Analytical Pyrolysis of Cedar Wood Meal

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Analytical pyrolysis of cedar wood meal was performed using two pyrolysis–gas chromatography (Py-GC) systems: a Py-GC/flame ionization detector (Py-GC/FID) consisting of a micro-pyrolyzer (EGA/PY-3030D, Frontier lab) and a GC-2010 Plus (Shimadzu), and a Py-GC/mass spectrometer (Py-GC/MS) consisting of a micro-pyrolyzer (JCI-22, JAi) and a JMS T-100GCV GC-TOFMS instrument (JEOL). Samples (0.5 mg) were pyrolyzed at 450, 500, 550, and 600 °C using the Py-GC/FID and at 590 °C using the Py-GC/MS. For both Py-GC analyses, the GC was equipped with an Rtx-Wax capillary column (60 m × 0.25 mm i.d.; 0.25 µm film thickness, RESTEK). The injector temperature was maintained at 250 °C, and split injection was used with a 1:100 split rate. The column oven temperature was held at 40 °C for 5 min and then raised to 250 °C at a rate of 4 °C/min. The temperature was then maintained for 60 min. For the Py-GC/MS analysis, a NIST mass spectral library was employed to identify each peak. After identification, each peak of the chromatograms resulting from Py-GC/FID analysis was identified based on the retention times of authentic samples (methane (GL Science), methanol, acetic acid, guaiacol, phenol, eugenol, 5-hydroxymethylfurfural, coniferylalcohol, levoglucosan (Wako), 4-methylguaiacol, furfural (TCI), and 2(5H)furanone (Aldrich)) and the results obtained via Py-GC/MS analysis.
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10

Intramuscular Lipid Extraction and Fatty Acid Analysis

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Total intramuscular lipids were extracted according to Folch et al. (1957) (link). Total lipid content was measured by weighing the lipid extracts after solvent evaporation. The total lipids were methylated with boron fluoride-methanol (Sigma Aldrich) according to Morrison and Smith (1964) (link). The fatty acid methyl esters were analyzed by a QP-2010 gas chromatograph (Shimadzu, Japan) equipped with a flame ionization detector and a split injector. One microliter of fatty acid methyl esters was injected in split mode (5:1) onto a Rtx-Wax capillary column (Restek, USA; 30 m × 0.25 mm id × 0.25 μm film thickness). The temperature of the column was programmed as follows: 1 min at 140℃, increments of 8℃/min to 180℃ and held at 180℃ for 2 min; increments of 3℃/min to 210℃; and increments of 5℃/min to 230℃ and held at 230℃ for 10 min. The temperature of the injector and the detector were both 250℃. The flow rate of the carrier gas (N2) was 1.5 mL/min. Fatty acids were identified by comparing the retention time of the samples with those of the standards (Sigma). Results were expressed as percent of the total fatty acid methyl esters.
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