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22 protocols using leibovitz s medium

1

Lung Cancer Cell Line Culture and Inhibitors

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All lung cell lines were obtained directly from the American Type Culture Collection (ATCC, Manassas, VA, USA). Lung SCC lines H226, H2170, H520, H596, and ChaGo‐k‐1 were maintained in RMPI‐1640 (Nacalai Tesque), Calu‐1 in McCoy's 5a (Nacalai Tesque, Kyoto, Japan), SK‐MES‐1 in DMEM (Nacalai Tesque), SW900 in Leibovitz’s medium (Gibco, Life Technologies, Carlsbad, CA, USA), H1869 in ACL‐4 (Gibco, Life Technologies), and H2066 in HITES medium (Gibco, Life Technologies). Normal lung fibroblast cells (MRC‐5, IMR‐90, and WI‐38) were cultured in EMEM (Gibco, Life Technologies). All media were supplemented with 10% fetal bovine serum, 2 mm l‐glutamine, 100 μg·mL−1 streptomycin, and 100 U·mL−1 penicillin. ACL‐4 and HITES were further supplemented with additional nutrients as recommended by the ATCC. All cell lines were authenticated with GenePrint® 10 System (Promega, Fitchburg, WI, USA).
For inhibitor studies, belinostat (PXD101), bortezomib (Velcade), GDC0879, PD0325901, RDEA119, and GSK1120212 were obtained from Selleck Chemicals (Houston, TX, USA); cisplatin from Hospira (Lake Forest, IL, USA); MG‐132 from Sigma (St. Louis, MO, USA); and cetuximab was from Merck (Darmstadt, Germany).
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2

Synthesis and Purification of AUT5 and AUT1

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AUT5 ((5 R)-5-ethyl-3-[6-(spiro[1-benzofuran-3,1’-cyclopropan]-4-yloxy)-3-pyridinyl]-2,4-imidazolidinedione; PubChem CID: 57410333) and AUT1 ((5 R)-5-Ethyl-3-(6-{[4-methyl-3-(methyloxy)phenyl]oxy}i-3-pyridinyl)-2,4-imidazolidinedione); PubChem CID: 53230344) were synthesized and purified by Autifony Therapeutics, LTD (Stevenage, UK)17 . Lyophilized compounds were dissolved in DMSO to make a 10 mM stock, which was kept at 4 oC and was stable for up to 3 months. Immediately before use, AUT5 was diluted to the desired working concentrations in ND96 containing (in mM): 96 NaCl, 2 KCl, 1.8 CaCl2, 1 MgCl2, 5 HEPES, 2.5 sodium pyruvate, adjusted to pH 7.4 with NaOH. Collagenase A was purchased from Sigma (St. Louis, MO), Leibovitz’s medium was purchased from Gibco (Thermo Fisher Scientific, Waltham, MA), PMA, DMSO and all other standard chemicals were purchased from Sigma-Aldrich (St. Louis, MO) (Supplementary Materials, Table S5).
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3

Maintaining Insect and Mammalian Cell Lines

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The Sf9 insect cell line, a clonal isolate of IPLB-Sf21-AE cells, derived from the fall armyworm Spodoptera frugiperda [32 (link)], was maintained in TC-100 medium (Invitrogen, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS), penicillin G (60 µg/mL), streptomycin sulfate (200 µg/mL), and amphotericin B (0.5 µg/mL). Baby hamster kidney-derived BHK-21 cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM) (Gibco/Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% FBS. Ae. albopictus-derived C6/36 cells were maintained in Leibovitz’s medium (Gibco/Thermo Fisher Scientific) containing 10% FBS. Ae. aegypti-derived Aag2 cells were maintained in Schneider’s Drosophila medium (Gibco/Thermo Fisher Scientific) containing 10% FBS. Sf9 cells, C6/36 cells, and Aag2 cells were cultured at 27 °C, and BHK-21 cells were cultured at 37 °C with 5% CO2.
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4

Bladder cancer cell lines for in vitro studies

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The human normal bladder epithelial cell line SV-HUC-1 and BC cell line (13 (link), 14 (link)) (two grade 1 cancer cell line SW780/RT4, a grade 2 cancer cell line 5637, and a grade 3 cancer cell line T24) obtained from Shanghai Cell Bank of the Chinese Academy of Sciences (Shanghai, China) were used for in vitro experiments. The normal bladder epithelial cell line of SV-HUC-1 was cultured in F12K (Gibco; Thermo Fisher Scientific, Inc.). BC cell lines of 5637 and T24 were cultured in RPMI-1640 (Gibco; Thermo Fisher Scientific, Inc.). RT4 was cultured in McCoy’s 5A (Gibco; Thermo Fisher Scientific, Inc.). SW780 was cultured in Leibovitz’s medium (Gibco; Thermo Fisher Scientific, Inc.). Each media was supplemented with 10% FBS (Gibco; Thermo Fisher Scientific, Inc.) and 1% P/S (Gibco; Thermo Fisher Scientific, Inc.). Cell culture reagents were bought from Gibco and the cells were cultured at 37˚C and 5% CO2.
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5

Chikungunya Virus Propagation in Aedes albopictus Cells

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The CHIKV (06.21_E1-A226V isolate, La Reunion Island) [14 (link)] strain was used in this study. The isolate was supplied by Anna-Bella Failloux and amplified on an Ae. albopictus cell line (C6/36). Briefly, C6/36 cells were grown in sterile cell culture flasks (T25, 50 capacity) and maintained in a Leibovitz‘s medium (Gibco, Thermo Fisher Scientific, Reinach, Switzerland) supplemented with 1% antibiotics-antimycotics (penicillin, streptomycin, and amphotericin B) and 4% fetal bovine serum (FBS). Confluent layers of C6/36 cells were inoculated with 100 µL of the original isolate and incubated at 28 °C w/o CO2 for three days. After the incubation, the supernatant from the infected flask was propagated another time in a new flask layered with a C6/36 cell line generating a P2 passage.
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6

Cell Viability Assay with Duo-OMe and PNA-Py²Duo

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MCF-7 cells were seeded into 96-well plates (104 cells/well) and allowed to adhere overnight. Media was replaced with Duo-OMe (4) and PNA-Py2Duo (12) at different concentrations in Leibovitz’s medium (Gibco) and cells were incubated at 37 °C under 0% CO2 in humidified incubator for 3 h. The cells were then washed three times with DMEM; fresh media (DMEM, no phenol-red) was replaced and the cells were incubated for additional 72 h at 37 °C, 5% CO2. 10 µL of Hoechst 33342 from a 5 µg/mL stock in PBS was added to each well and incubated for 15 min at 37 °C. Fluorescence images were acquired using a HTS IXM microscope and subsequent image analysis and nuclei count was achieved by using MetaXpress® software. Drug effect was expressed as normalized nuclei count. 50% nuclei count was obtained from sigmoidal curve fits of normalized nuclei count vs. concentration data using GraphPad Prism 7. All experiments were conducted in triplicates, with error bars representing the standard error of the mean.
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7

Spinning-Disk Confocal and TIRF Microscopy

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Spinning-disk confocal time-lapse imaging was done at 37°C in a thermostat-controlled chamber using an Eclipse 80i microscope (Nikon) equipped with spinning disk confocal head (Perkin), a 100× objective, and either an Ultra897 iXon camera (Andor) or CoolSnapHQ2 camera (Roper Scientific). Fixed samples were imaged using a 60× objective with the same setup. TIRF microscopy was done using Leibovitz’s medium (Life Technologies) at 37°C in a thermostat-controlled chamber. An Eclipse Ti inverted microscope (Nikon) equipped with either a TIRF module (Nikon) or an iLAS2 azimuthal TIRF module (Roper Scientific), a 100× TIRF objective, a beam splitter (Roper Scientific), and an Evolve 512 electron-multiplying CCD camera (Photometrics) was used in this case (Boulanger et al., 2014 (link)). All acquisitions were driven by Metamorph (Molecular Devices).
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8

Authentication and Culture of Melanoma Cell Lines

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WM35, a radial growth phase cell line, was provided Dr. Nikolas Haass and the malignant SK-Mel28 cell line was provided by Dr. Brian Gabrielli (both University of Queensland, Australia). WM35 cells were maintained in MCDB 153 medium (Sigma-Aldrich) supplemented with 4% FCS, 20% Leibovitz’s medium (Life Technologies), bovine insulin (5 µL/mL), CaCl2 (1.68 mM), sodium bicarbonate (7.5% w/v). SK-Mel-28 cells were maintained in RPMI 1640 medium supplemented with 2 mM L-glutamine, 25 mM HEPES, 10% FCS. Both media contained Penicillin (50 U/mL) + Streptomycin (50 µg/mL) and 0.01% Gentamycin (Life Technologies). The identity of both these cell lines was authenticated using short tandem repeat (STR) profiling by CellBank Australia and tested for mycoplasma using the MycoAlertTM mycoplasma detection kit (Lonza).
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9

Quantifying Hepatobiliary Transport in CLC Organoids

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CLC organoids were loaded with 5uM of Cholyl-Lysyl-Fluorescein (CLF, Corning Incorporated) for 30 minutes at 37°C and the washed with Leibovitz’s medium (Life technologies) 3 times. Following completion of the third wash, time lapse images were taken using a confocal microscope for 10 minutes. To demonstrate that the changes in CLF fluorescence intensity observed were secondary to active export of CLF from the organoid lumen, the experiment was repeated with 5μM of unconjucated Fluorescein Isothiocyanate (FITC) (Sigma-Aldrich) as a control. Multiple fluorescence measurements were made (around 1000) between the organoid interior and exterior. Fluorescence in the organoid lumen was normalized over background measured in the surrounding external area. Each experiment was repeated in triplicate. Error bars represent SD. Mean fluorescence intensity comparisons were performed using a two sided student’s t-test.
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10

Marburg Virus Minigenome Assay

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A total of 2 × 104 Huh-7 cells were seeded onto a μ-Slide 4 well (ibidi) and cultivated in DMEM/PS/Q with 10% FBS. Each well was transfected with the following plasmids, encoding all MARV structural proteins: (250 ng of pCAGGS-NP, 50 ng of pCAGGS-VP35, 125 ng of pCAGGS-VP30-GFP, 50 ng of pCAGGS-VP24, 500 ng of pCAGGS-L, 125 ng of pCAGGS-VP40 and 125 ng of pCAGGS-GP), together with a T7-driven, MARV minigenome-expressing plasmid, which encodes a Renilla luciferase, and a T7 polymerase-coding plasmid (pCAGGS-T7) [26 (link), 27 (link)]. The inoculum was removed at 1 h post-transfection (p.t.), and 500 μL CO2-independent Leibovitz’s medium (Life Technologies) with PS/Q, non-essential amino acid solution, and 20% (vol/vol) FBS were added. Live-cell time-lapse experiments were recorded with a Nikon ECLIPSE TE2000-E using a 63× oil objective or a GE healthcare Delta Vision Elite using a 60× oil objective in biosafety level-2 laboratories.
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