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4 protocols using ab119796

1

Femur Tissue Preparation and Immunohistochemistry

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For femur samples, the preparation process was performed by Beijing Genepool Biotechnology Company Limited. Briefly, tissue samples were fixed for 2 days with 4% paraformaldehyde and dehydrated according to standard protocols. Paraffin embedded sections with 5 mm thick were placed in a 65 °C oven for 2 h, dewaxed to water, and washed with PBS for three times for 5 min each time. The slices were placed in EDTA buffer for microwave repair and boiled for 10min. The sections were blocked with 5% normal goat blocking serum for 20 min at room temperature, and then incubated with the primary antibodies anti-PCK2 (6924S, Cell signaling technology, 1:250) and anti-PFKP (ab119796, Abcam, 1:250) overnight at 4 °C. Washed with PBS for 3 times, 5min each time, the secondary antibodies corresponding to the species of the primary antibody were added to cover the slices in the circle, and incubated at room temperature in dark for 60 min. The nuclei were stained by DAPI for 60 min. After the slices were slightly dried, they were sealed with anti-fluorescence quenching sealing agent. Then the images were scanned and analyzed. Immunohistochemical (IHC) staining was also used for validation of PFKP expression, the antibody was ab119796 (anti-PFKP, Abcam, 1:100, Cambridge, UK).
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2

Mutational Analysis and Immunohistochemistry of ICC

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Formalin-fixed, paraffin-embedded (FFPE) tissue blocks from 101 patients with ICC who underwent surgical treatment at the University of Tokyo Hospital were used for the extraction of tumor DNA. Mutational analysis of IDH was performed by direct sequencing of PCR products. FFPE tissue sections were immunohistochemically stained using the primary antibody against PFKP (ab119796, Abcam). Staining results were scored by two pathologists (K.M. and A.H.) blinded to the mutational profile of IDH. The scoring system was validated by the percentages of positive cells as follows: score 0, <1%; score 1, 1–5%; score 2, 6–25%; score 3, 26–50%; and score 4, >51%. Simultaneously, scores 0 and 1 were defined as negative expression, score 2 as low, score 3 as moderate, and score 4 was defined as high expression, respectively. Detailed procedures for immunohistochemistry and DNA sequencing were previously described51 (link). This study was approved by the Ethics Committee of the University of Tokyo, and carried out in accordance with the Declaration of Helsinki. Informed consent in writing was obtained from all patients.
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3

Western Blot Analysis of Metabolic and Signaling Proteins

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Cell pellets were extracted from GelMA as described above. The pellets were lysed in RIPA lysis buffer (medium) with cocktail (Huaxingbochuang) and phosphatase inhibitors (Huaxingbochuang), and the protein concentration was determined using the BCA kit. The Western blot was performed as previously described [24 ]. The following antibodies were used: anti-GAPDH (ab9485, Abcam), anti-PCK2 (6924S, Cell signaling technology), anti-PFKP (ab119796, Abcam), anti-PFKM (ab154804, Abcam), anti-PFKL (ab154804, Abcam), anti-FAK (ab40794, Abcam), anti-vinculin (13901, Cell signaling technology), anti- Runt-related transcription factor 2 (RUNX2) (ab12556, Abcam), anti-phospho-AKT S473 (4060; Cell Signaling Technology, Boston, MA, USA), anti-AKT (4691, Cell Signaling Technology), anti-phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (4370, Cell Signaling Technology), anti-p44/42 MAPK (Erk1/2) (4695, Cell Signaling Technology).
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4

Docetaxel and Lactate Metabolism Regulation

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Docetaxel (ID0400) and lactate (L8601) obtained from Solarbio life science (Beijing, China). lactate assay kits (KA0833) was purchased from Abnova. The SimpleChIP® Enzymatic Chromatin IP Kit (Magnetic Beads) (9003) was from Cell Signaling Technology (Danvers, MA, USA). Glucose uptake fluorometric assay kit (MAK084) was purchased from Sigma Aldrich (St. Louis, MO, USA). Antibodies targeting PKM2 (Abcam, ab137852,1:2000 for WB), HIF-1α (Abcam, ab114977,1:2000 for WB), PFKP (Abcam, ab119796,1:2000 for WB), α-tubulin (Abcam, ab7291,1:4000 for WB) and β-actin (Abcam, ab8226,1:4000 for WB) were purchased from Abcam Company (MA, USA); Fetal boive serum (FBS), Alexa-488- and 594-conjugated secondary antibodies were from Invitrogen (Thermo Fisher Scientific). The trizol was purchased from Invitrogen and All-in-One First-Strand cDNA Synthesis Kit and All-in-One qPCR Mix were obtained from GeneCopoeia (Guangzhou, China). Subcellular fractionation was conducted using NE-PER™ Nuclear and Cytoplasmic Extraction Reagents (thermo fisher) following the manufacturer’s recommendations. All ultrapure reagents were from Promega (Madison, WI, USA).
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