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Sybr primescript plus rt pcr kit

Manufactured by Takara Bio
Sourced in United States, Japan

The SYBR PrimeScript Plus RT-PCR Kit is a reagent kit designed for real-time reverse transcription polymerase chain reaction (RT-PCR) analysis. The kit includes all the necessary components for efficient and sensitive RNA detection and quantification, including a high-performance reverse transcriptase and a SYBR Green-based detection system.

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6 protocols using sybr primescript plus rt pcr kit

1

BNIP3 Expression Quantification by qRT-PCR

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The RNAiso Plus (Takara Bio, 9108) was used to extract total RNA and the subsequential reverse transcription was conducted with a PrimeScript™ RT reagent Kit (Takara Bio, RR047A). The resulting cDNAs or DNAs were quantified using real-time PCR with a SYBR PrimeScript PLUS RT-PCR Kit (Takara Bio, RR096A) on the Agilent Mx3000P Real-Time PCR System (Agilent Technologies, Santa Clara, CA, USA), using the following primers: BNIP3 forward primer, 5′-ACCACAAGATACCAACAGAG-3′; BNIP3 reverse primer, 5′-AGAGCAGCAGAGATGGAA-3′; β-actin forward primer, 5′-CTGTGCTATGTTGCCCTGGACTTC-3′; β-actin reverse primer, 5′-GCTCGTTGCCGATGGTGATGAC-3′. The relative expression was calculated using the 2-ΔΔCT method.
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2

Quantification of miRNAs and c-myc mRNA

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Total RNA was extracted from prostate tissue or LNCaP cells using Trizol (Takara, Japan). For miRNAs qRT-PCR, a total of 10 ng of RNA was transcribed into cDNA using the Taqman miRNA reverse transcription kit (Takara, Japan). And real-time PCR was performed with specific sense primers (Supplementary Table S1) and general antisense primer supplied by miRNA PrimeScript RT Enzyme Mix Kit (Takara, Japan) according to the manufacturer’s instructions. Quantitative c-myc gene-expression analysis was performed with specific primers (Supplementary Table S2) by using one step SYBR PrimeScript plus RT-PCR kit (Takara, Japan) according to the manufacturer’s instructions. MiRNAs and mRNA expression were normalized to RNU6 and GAPDH, respectively, using the 2−∆∆Ct method.
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3

Retinal RNA Isolation and qRT-PCR Analysis

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The rats were sacrificed on schedule, and the retinal tissue was peeled from the eyes and rapidly frozen in liquid nitrogen. Total RNA was isolated from the tissue by using TRIzol reagent (Takara, Shiga, Japan) and incubated with chloroform for 15 min. After 15 min of centrifugation at 12,000× g 4°C, isopropanol was added to it and the admixture underwent a centrifugation at 12,000× g at 4°C for 15 min. Then, 75% ethanol prepared with RNase-free water was used to wash the RNA, and diethyl pyrocarbonate water resuspended the RNA. Afterward, cDNA was synthesized with PrimeScript RT reagent kit (Takara, Shiga, Japan) at 37°C for 15 min followed by 85°C for 5 s. qRT-PCR was performed by SYBR PrimeScript Plus RT-PCR Kit (Takara, Shiga, Japan) according to the operating instructions and applied with ABI 7500 PCR system (ABI, USA). The reaction was performed with 40 amplification cycles of denaturation at 95°C for 30 s followed by 94°C for 5 s and 60°C for 34 s. The quantity of target mRNA in test samples was detected and normalized to β-actin. The 2−ΔΔct method was used to quantify the relative gene expression. Each sample was tested in triplicate. The Table 1 displays the sequences of the primers applied in this study.
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4

Gene Expression Analysis in Mouse Retina

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Total RNAs from mouse retinal tissues were isolated using TRIzol reagent (Invitrogen, California, USA) and quantified using a NanoDrop™ 2000 Spectrophotometer (Thermo Fisher Scientific, Massachusetts, USA). cDNA was synthesized with a PrimeScript™ RT Reagent Kit (Takara, Kyoto, Japan). Thereafter, qPCR was performed using a 7500 Fast Real-Time PCR system (Thermo Fisher Scientific, Massachusetts, USA) with the SYBR PrimeScript™ Plus RT-PCR Kit (Takara, Kyoto, Japan). Gene expression was normalized to GAPDH mRNA. The fold change in gene expression was calculated by comparing it with a standard cycle. The primers of the target genes are listed in Supplementary Table S2.
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5

Quantifying lncRNA and miRNA Expression

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Total RNA from tissues and cell lines was extracted by using TRIzol Reagent (Invitrogen). cDNA was synthesized through the PrimeScript RT reagent kit (TaKaRa) according to manufacturer’s instructions. Then real-time PCR assay was performed by employing SYBR PrimeScript™ PLUS RT-PCR Kit (TaKaRa) to detect the expression level of LncRNA-RP11-284F21.9, miR-769-3p and PPWD1. The reaction condition of PCR was 95°C for 30 s, 60°C for 40 s for 40 cycles. β-actin or U6 were used as an endogenous control to normalize. The relative expression levels were counted by 2−ΔΔCt method. The primer sequence used in the present study were as follows: LncRNA-RP11-284F21.9: forward, AGGATTGGCACTCACTTCGG, reverse, TCTCTCACCACGTCTGGTCT; miR-769-3p: forward, 5′-GCGGCGGCTGGGATCTCCGGGGTC-3′, reverse, 5′-GTGCAGGGTCCGAGGT-3′; β-actin: forward, 5′-TGTCACCAACTGGGACGATA-3′, reverse, 5′-GGGGTGTTGAAGGTCTCAAA-3′; U6: forward, 5′-ATTGGAACGATACAGAGAAGATT-3′, reverse, 5′-GGAACGCTTCACGAATTTG-3′.
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6

Retinal Gene Expression Profiling

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qRT-PCR analysis was accomplished using gene-specific primers (Table S3). Specifically, total RNA was extracted from retinas using Trizol and reverse transcribed with the PrimeScript RT reagent Kit with gDNA Eraser (Takara, Kyoto, Japan) to synthesize cDNA. qRT-PCR was then performed in the Applied Biosystems™ 7500 (Thermo Fisher Scientific, Massachusetts, USA) using the SYBR PrimeScript Plus RT-PCR Kit (Takara, Kyoto, Japan). For each gene, relative expression was calculated by comparison with a standard curve, following normalization to the housekeeping gene GAPDH expression.
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