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Acquity uplc pda system

Manufactured by Waters Corporation
Sourced in United States

The ACQUITY UPLC-PDA system is a high-performance liquid chromatography (HPLC) instrument designed for laboratory analysis. It combines a UPLC (Ultra-Performance Liquid Chromatography) separation module with a Photodiode Array (PDA) detector. The system provides efficient and rapid separation of complex samples, delivering high-resolution chromatographic data.

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9 protocols using acquity uplc pda system

1

Quantification of Phenolic Acids by UPLC-PDA

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Phenolic acid extracts, including free and bound forms, were analyzed using a Waters AcquityTM UPLC-PDA System (Waters, Rydalmere, New South Wales, Australia). The compounds were separated on a Waters HSS-T3 column (100 × 2.1 mm i.d; 1.8 μm) maintained at 40 °C, with 0.1% formic acid in Milli-Q-water (v/v) as eluent A and 0.1% formic acid in acetonitrile (v/v) as eluent B. The gradient program is as follows: 3 min, 5% B; 4.3 min, 20% B; 9 min, 45% B; 11 min, 100% B; 14 min, 100% B, and 17 min, 5% B. The flow rate was at 0.4 mL/min. Phenolic acids were quantified at 280 nm using the external calibration curves of phenolic acid standards, including p-hydroxybenzoic acid, vanillic acid, caffeic acid, p-coumaric acid, ferulic acid, and sinapic acid.
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2

Carotenoid Quantification by UPLC-PDA-MS/MS

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Carotenoids were analyzed using a Waters AcquityTM UPLC-PDA system (Supplementary Table S1). Detected carotenoid compounds were identified using the same UHPLC-MS/MS system as described for the polyphenol analysis (Section 2.3.3) but employing an atmospheric pressure chemical ionization (APCI) operated in positive mode. A full MS scan (m/z 80–1200) was acquired. For the compounds of interest, a MS/MS scan range of m/z 80–650 was selected, with NCE at 20 V. Carotenoids were quantified at 450 nm, using external calibration curves of all-trans beta carotene, lutein and zeaxanthin. Concentrations of carotenoid standards were determined spectrophotometrically (Cintra 303, GBC Scientific Equipment, Braeside, Australia) using the specific molar absorption coefficients of carotenoids in solutions [23 (link)].
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3

Comprehensive Phenolic Profiling of Feijoa

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Analysis of individual (main) phenolic acids and flavonoids (free and bound) by UPLC-PDA followed the method of Gasperotti et al. [21 (link)], using a Waters AcquityTM UPLC-PDA System (Waters, Milford, MA, USA). The compounds were separated on a Waters HSS-T3 column (100 × 2.1 mm i.d; 1.8 μm) maintained at 40 °C, with aqueous 0.1% formic acid (eluent A) and 0.1% formic acid in acetonitrile (eluent B). The gradient program (time (min), % B) was: (0.0, 5); (3.0, 5); (4.3, 20); (9.0, 45); (11.0, 0); (14.0, 0) with a flow rate of 0.4 mL/min.
Detected peaks in the feijoa samples were identified by a Thermo high resolution Q Exactive mass spectrometer equipped with a Dionex Ultimate 3000 UHPLC system (Thermo Fisher Scientific Australia Pty Ltd., Melbourne, VIC, Australia). A full scan in negative (ESI) ionization mode was acquired at a resolving power of 70,000 full width half maximum, followed by an MS2 scan range of m/z 100–1200 for the compounds of interest. The Thermo XcaliburTM software (Thermo Fisher Scientific) was used for data acquisition. The detected peeks were identified by matching spectrum, retention time, and MS data obtained from literature. External calibration curves were constructed from the polyphenolic standard solutions (0–2 mg/10 mL in methanol) for quantification, except for dihydroxyflavone, which was quantified as mg of catechin equivalent.
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4

Polyphenol Quantification by UPLC-PDA-MS

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Polyphenols were analyzed using a Waters AcquityTM UPLC-PDA System (Waters, Rydalmere, Australia) with detailed chromatographic conditions summarized in Supplementary Table S1. Peak identities were confirmed using a Thermo high resolution Q Exactive mass spectrometer equipped with electrospray ionization (ESI) source and a Dionex Ultimate 3000 UHPLC system (Thermo Fisher Scientific Pty, Ltd., Scoresby, Australia). A full MS scan in negative ion mode was acquired from m/z 120 to 1000 at a resolving power of 70,000 full-width at half maximum. For the compounds of interest, a MS/MS scan range of m/z 100–1000 was selected, with normalized collision energy (NCE) at 35 V. The compound identification was based on comparing retention time, UV-Vis spectra, mass spectra and fragmentation patterns with those obtained from available standards and/or literature. Polyphenols were quantified at 320 nm, using external calibration curves of different polyphenol standards as stated in Section 2.2.
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5

Extraction and Analysis of A. panax Metabolites

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The crude extracts from the liquid fermentation of A. panax were extracted by a KQ-500E Ultrasonic Cleaner (Ultrasonic Instrument Co., Ltd., Kunshan, China). The sample was concentrated under reduced pressure with a rotary evaporator device (EYELA, Tokyo, Japan), which was equipped with a low-temperature cooling circulation pump (Great Wall Scientific Industrial and Trade Co., Ltd., Zhengzhou, China) and a vacuum diaphragm pump (iLMVAC Co., Ltd., Germany). The crude extracts and standard were analysed by a UPLC-Q-TOF-MS/MS system (Waters, United States). Chromatographic analysis was carried out with a Waters ACQUITY UPLC-PDA system equipped with an analytical reverse-phase C-18 column (2.1 mm × 100 mm, 1.7 μm, ACQUITY BEH, Waters, United States) with an absorbance range of 200 nm to 400 nm. Time-of-flight MS detection was performed with a Xevo G2-SQTOF system (Waters), equipped with an electrospray ionisation source (ESI), and the mass data were obtained using Mass Lynx 4.1 software (Waters, USA).
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6

Retinoid Quantification in Mouse Eyes

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Frozen mouse eyecups (1 eye/sample) were homogenized and derivatized with O-ethylhydroxylamine (100 mM) (method 1) or with O-ethylhydroxylamine (100 mM) and acetonitrile (method 2) on ice under dim red light. Retinoids were extracted with hexane and resuspended in acetonitrile for UPLC analysis [32 (link)] using a Waters Acquity UPLC-PDA system (Milford, MA) with a CSH C18 column as described [33 ]. Molar quantities per eye were calculated based on standard solutions with concentrations determined spectrophotometrically. Peak areas were calculated using Waters Empower Software and results were analyzed in Excel (Microsoft, Redmond, WA).
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7

Metabolomic analysis of phenylpropanoids and flavonoids

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A 5 μL aliquot from the final 100 μL sample extraction was analysed by UPLC-MS by an ACQUITY UPLC-PDA system coupled to a Q-ToF Micromass spectrometer (Waters) according to Campos and co-workers [96 (link)]. All the data were acquired with the Masslynx NT4.1 software (Waters Corp. Mildford, MA, USA). For the untargeted analysis of the hydrolysed polar and semi-polar compounds, a metabolomic study of the total forms was performed using the negative ESI-MS spectra.
For the in vitro assay test, a 5 μL aliquot from the final 200 μL volume reaction was injected into UPLC-PDA-MS to detect and quantify with standards the phenylpropanoids cinnamic acid, p-coumaric acid, caffeic acid, ferulic acid, o-coumaric acid and chlorogenic acid, the flavonoids quercetin, kaempferol, naringenin and apigenin, and the simple phenolics benzoic acid, 4-hydroxybenzoic acid and 2,4,6-trihydroxybenzoic acid (THBA).
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8

Enzymatic Product Characterization by NMR and UPLC-MS

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1H and 13C NMR spectra were recorded on Bruker DRX 500 spectrometer. The observed chemical shift values were reported in ppm. The UPLC and LC-MS analyses of the enzymatic products were performed as previously described with the exception that the solvent system comprised acetonitrile (A) and water (0.1% formic acid; B) at 0.5 mL min-1 with the following gradient program: 0 min, 30% A; 4 min, 70% A; 4.5 min, 100% A; 6.5 min, 100% A (Wang et al., 2019 (link)). A Waters ACQUITY UPLC-PDA system was equipped with an ACQUITY UPLC HSS T3 (2.1 × 50 mm, 1.8 μm) column with an absorbance range of 210 to 400 nm. For the isolation of the enzymatic product, the same approach as previously described was employed (Wang et al., 2019 (link)).
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9

Pigment Extraction and Spectral Analysis

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Pigments were extracted from the lyophilized HA-Ycf4 and PSI–LHCI preparations with N,N-dimethyl-formamide (DMF) and were applied onto an HPLC (ACQUITY, UPLC/PDA system; Waters)42 (link). Absorption spectra were recorded with a spectrophotometer (SHIMADZU, UV2450S).
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