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22 protocols using accustain

1

Cytokine Sensitivity Assays for Hematopoietic Cells

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For cytokine sensitivity assays, hematopoietic cells (Table S2) were plated at 2×104 in methylcellulose (MethoCult® H4531, Stem Cell Technologies) with escalating concentration of GM-CSF (0.01, 0.1, 1 and 10 ng/mL) (R&D) or 1.5×104 in methylcellulose containing agar leukocyte conditioned medium (Agar-LCM), formulated to support the growth of granulocyte and macrophage progenitors. The hypersensitivity to GM-CSF was observed in a dose-response curve, represented as percentage of maximal colony formation and calculated by dividing the number of colonies at each GM-CSF concentration by the average number of colonies at GM-CSF 10 ng/mL (Table S2). For decoy and over-expression miR-223 assays, the treated hematopoietic cells were plated at 2×104 with 0.01 ng/mL GM-CSF (Table S2). After 14 days at 37 °C in humidified 5% CO2, myeloid colonies were counted. For clonogenic myeloid progenitor assays, MethoCult® H4435 Enrich (Stem Cell Technologies) were used. Fourteen days after plating, myeloid and erythroid colonies were counted based on standard guidelines previously described (Nissen-Druey et al., 2005 (link)). Cell morphology was assessed using a Cytospin 3 cytocentrifuge (Thermo Fisher Scientific) and staining with Giemsa (Accustain, Sigma-Aldrich).
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2

Reagents and Materials Procurement

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Melatonin, SDS, ethanol, accustain (formalin solution 10% neutral buffered), and Inactin (thiobutabarbital) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Misoprostol was purchased from Tocris Bioscience (Bristol, UK). Teduglutide was purchased from BOC Sciences (Shirley, NY, USA). Sodium phosphate dibasic dihydrate (Na2HPO4·2H2O), potassium dihydrogen phosphate (KH2PO4), sodium hydroxide (NaOH), and sodium chloride (NaCl) were purchased from Merck KGaA (Darmstadt, Germany). 51Cr-EDTA was purchased from PerkinElmer Life Sciences (Boston, MA, USA). Parecoxib (Dynastat) was obtained from Apoteket AB, Uppsala, Sweden.
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3

Estrous Cycle Monitoring and Behavior Analysis in Mice

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Female WT and MT1KO mice aged 3 months were separated and put into individual cages (33 × 12 × 13 cm). After one week acclimatization, the estrous cycle was monitored by vaginal cytology as described by Byers et al (Byers et al., 2012 (link)). A vaginal swab was collected everyday between ZT5 and ZT7 (ZT: zeitgeber; ZT0: Lights ON) time for 12 consecutive days. A cotton tipped swab (Puritan Medical Products Company, LLC Guilford, ME) was dipped in a 1% saline solution and inserted into the vagina of the mouse. The wetted swab was rolled gently against the vaginal wall and the collected cells were placed onto a slide. The slides were air dried and stained with accustain (Sigma-Aldrich, St. Louis, MO) and cells were processed to determine the stage of the estrous cycle.
Mice homecage behaviors were recorded as previously described during the last four days and during vaginal cytology monitoring. The average weight for female mice was 21.14 ± 0.33g (n=16) for WT and 21.00 ± 0.21g (n=16) for MT1KO mice. Mouse behaviors were analyzed using phenotypic arrays and temporal distribution of behaviors group-based on estrous cycle stage.
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4

Quantifying Nuclear NFκB Translocation

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Human umbilical vein ECs were cultured until confluence on collagen-coated μ-slides (Ibidi, Martinsried, Germany) and treated as indicated. Cells were washed, fixed with Accustain™ (Sigma-Aldrich), permeabilized by 0.2% Triton X-100 (Merck), blocked in 0.2% BSA and incubated with an anti-NFκB p65 (Santa Cruz Biotechnology) primary and AlexaFluor 488-linked secondary antibody (Molecular Probes®/Life Technologies). Fluorescence microscopy was performed on a Zeiss Observer Z1 (Zeiss, Oberkochen, Germany). Quantification of p65 NFκB nuclear intensity was performed with ImageJ version 1.43u (National Institutes of Health, Bethesda, MD, USA).
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5

Gram Staining for Colon Bacterial Invasion

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To determine bacterial invasion in the colon after irradiation, gram staining was performed. Colon tissue sections (5 μm thickness) were mounted on slides, deparaffinized in xylene and rehydrated in graded solutions of ethanol. The tissues were gram stained Accustain™ (Sigma-Aldrich LLC, St. Louis, MO) according to the manufacturer’s instructions.
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6

Immunohistochemical Analysis of NGF in Human IVD Degeneration

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The AF tissue from human IVDs with degenerative grades 2 to 4 (n = 3 IVDs per grade) was fixed in Accustain (Sigma–Aldrich, St Louis, MO), paraffin embedded, and sectioned. Slides were incubated with anti‐NGF antibody (Cat. Number EP1320Y; Novus Biologicals, Littleton, CO) (0.1 μg/mL) overnight at 4°C. Secondary antibody and further processing of slides were performed using VECTASTAIN ABC kit (Vector Laboratories, Burlingame, CA) following manufacturer’s guidelines. Substrate and development were processed with 3,3′‐diaminobenzidine peroxidase substrate kit (Vector Laboratories, Burlingame, CA). Sections were counterstained with hematoxylin, dehydrated by sequential alcohol concentrations and xylene, and mounted in Permount (Thermo Fisher Scientific, Waltham, MA). Mouse IgG antibody (Cat. Number I‐2000; Vector Laboratories, Burlingame, CA) was used as negative control. Positive cells were validated based on immunohistochemistry reaction.
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7

Ultrastructural Analysis of Infected Malpighian Tubules

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Disrupted Malpighian tubules were smeared on microscope slides, air-dried, fixed in methanol (5 min), and stained with Giemsa solution (Accustain, Sigma-Aldrich; 45 min in a 1:10 dilution). Dried smears were embedded in Entellan (Merck). For scanning electron microscopy, cover glasses with smears of infected Malpighian tubules were air-dried and coated with gold particles using a Baltec SCD 040 sputter device. Micrographs were taken with a Quanta 200 electron microscope (FEI Company). For transmission electron microscopy, samples were fixed for several days with 2.5% glutaraldehyde in 0.1 M cacodylate buffer at 4 °C, rinsed with cacodylate buffer, and post-fixed for 1.5 h with reduced OsO4 at room temperature without darkening (fresh 1:1 mixture of 2% OsO4 and 3% K4[Fe(CN)6]). The samples were then rinsed with distilled water, and after dehydration in a series of ethanol (15 min each in 30%, 50%, 70%, 90%, 100%, 3 × 100% water free), they were embedded in Spurr’s resin55 (link). Ultrathin sections were stained with saturated aqueous uranyl acetate for 30 min in the dark, followed by Reynolds’ lead citrate56 (link) for 5 min. During the latter, sodium hydroxide pellets were put next to the grids in order to remove CO2 from the atmosphere and thus prevent precipitation of lead carbonate. The sections were investigated using a Philips CM 120 BioTwin electron microscope.
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8

Sarkosyl-Insoluble Tau Isolation

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Mice were sacrificed under carbon dioxide (CO2) anesthesia and the brains and spinal cords were dissected. Each hemibrain and spinal cord was placed in Accustain (a proprietary formalin-free fixative from Sigma-Aldrich, St. Louis, MO, USA) for tissue fixation for 24 hours at 4°C. After Accustain fixation, the hemibrain and spinal cord were stored in 70% ethanol at 4°C for paraffin processing. The other half of each brain and the cervical spinal cord were snap frozen stored at -80°C for biochemical processing. Tissues were homogenized in cold RIPA lysis and extraction buffer (Thermo-Fisher Scientific, Rockford, IL, USA) containing protease and phosphatase inhibitors. Samples were then centrifuged at 20,000 × g for 20 min at 4°C. The pellet was discarded, and a portion of the RIPA lysate was used for biochemical analysis. Sarkosyl-insoluble tau was isolated following previous reports [55 (link)], with RIPA supernatants adjusted to 1% sarkosyl. Samples were incubated for 1 hr at room temperature and then spun at 100,000 × g at room temperature. The supernatants were discarded and the pellets were resuspended in O+ buffer (62.5 mM Tris–HCl, 10% glycerol, 5% 2-mercaptoethanol, 0.1% SDS, phosphatase and protease inhibitors). Samples were then boiled for 3 min and kept at -20°C for Western blot analysis.
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9

Histological Analysis of Kidney Fibrosis

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The kidney tissue was fixed with 4% phosphate-buffered formalin solution (Macron Chemicals, Center Valley, PA, USA), embedded in paraffin block and cut into 4-μm sections. For histological analysis, after deparaffinization and rehydration by xylene and graded alcohols, the sections were subjected to Masson trichrome staining according to the manufacturer’s instructions (Accustain, Sigma-Aldrich). Twenty randomly selected nonoverlapping high-power fields (40× objective) were evaluated for each mouse, and the average for each group was then analyzed. The fibrotic area was quantified by ImageJ software (1.52a, US National Institutes of Health, Bethesda, MD, USA).
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10

Histological Tissue Processing and Staining

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Samples were fixed for 24 h at 4°C in 3.7% v/v formalin solution in PBS followed by embedding in paraffin wax and sectioning at 6 μm. Tissue sections were stained with hematoxylin and eosin (H&E) (Sigma-Aldrich), Alcian Blue (Atom Scientific, United Kingdom), PicroSirius Red (Sigma-Aldrich), and modified Verhoeff Van Gieson elastin stain (Accustain; Sigma-Aldrich).
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