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Streptavidin dylight 800

Manufactured by Thermo Fisher Scientific
Sourced in United States

Streptavidin DyLight™ 800 is a fluorescent labeling reagent used in various bioanalytical applications. It consists of the protein streptavidin conjugated to the DyLight™ 800 fluorescent dye. The product enables detection and quantification of biotinylated biomolecules through fluorescence-based techniques.

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4 protocols using streptavidin dylight 800

1

Biotinylation and Proteomic Analysis of Trypanosomes

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1.5 × 108 epimastigotes were pelleted at 2060 x g for 10 minutes, resuspended in 1 ml of LIT and incubated with 50 µM biotin for 10 minutes at 37oC. Parasites were washed twice with ice-cold PBS then resuspended in 1 ml cell lysis buffer 55 (link) (0.5% Nonidet P-40, 500 mM NaCl, 5 mM EDTA, 1 mM DTT, 50 mM Tris-Base, 0.4% SDS, pH 7.4) with Roche cOmplete Protease Inhibitor (Sigma-Aldrich, St. Louis, Missouri, USA), 100 μM PMSF and 10 μM TLCK. Lysates were sonicated using 3 pulses of 30 seconds at 100% amplitude (Q700 sonicator, QSONICA, Newton, Connecticut), with 15 sec breaks between to cool the tubes on ice. Samples were centrifuged at 16,000 x g for 20 minutes at 4°C and the supernatant was collected. Aliquots of clarified lysate (3 × 106 parasite equivalents) were resolved by SDS-PAGE (Mini-PROTEAN®TGX protein gel; Bio-Rad, Hercules, California, USA), transferred to PVDF membrane (Immobilon®-FL, MilliporeSigma, Burlington, Massachusetts, USA) and probed with Streptavidin DyLight 800 (Thermo Fisher Scientific, Waltham, Massachusetts, USA) to detect biotinylated proteins.
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2

Affinity Purification of Protein Complexes

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Chemicals were from Sigma-Aldrich unless otherwise specified. Detergent n-dodecyl-maltoside (DDM) was from Affimetrix-Anatrace. para-benzophenylalanine was from Bachem. SERVA Blue G and SERVAGel TG PRiME 8–16% precast gels were from Serva. NativePAGE Novex Bis-Tris 3–12% gels were from Life Technologies. Primers are listed in S5 Table and were synthetized by Eurofins and Integrated DNA Technologies. Polyclonal rabbit anti-MBP antibody were from New England Biolabs. Monoclonal mouse anti-RNApol antibody was from BioLegend. Monoclonal M2 anti-FLAG antibody, M2 anti-FLAG agarose beads, and 3xFLAG peptide were from Sigma-Aldrich. CaptureSelect-biotin, Streptavidin DyLight 800, and secondary antibodies goat anti-mouse IgG DyLight 800 conjugate and goat anti-rabbit IgG DyLight 680 conjugate were from Thermo-Fisher.
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3

Quantitative Western Blot Analysis

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Quantitative Western blot was performed using Odyssey Infrared Imaging System (Licor). Primary antibodies used in this study include rabbit anti-MeCP2 C-terminus (1:4000, in house), mouse anti-MeCP2 N-terminus (1:4000, Sigma M7433), mouse anti-NeuN (1:500, Millipore MAB377), rabbit anti-Avi tag (1:5000, Abcam ab106159, listed as anti-Tavi in main text, detects the minimal peptide substrate of biotin ligase BirA regardless of biotinylation status), rabbit anti-HDAC3 (1:1000, Santa Cruz sc-11417), rabbit anti-TBLR1 (1:1000, Bethyl A300–408A), rabbit anti-Sin3A, (1:500, Thermo Scientific PA1-870), rabbit anti-Histone H3 (1:1000, Abcam ab1791), and rabbit anti-TBP (1:1000, Cell Signaling #8515). Secondary antibodies include anti-rabbit IRDye 680LT (1:10,000, Licor), anti-mouse IRDye 800CW (Licor), Streptavidin Dylight 650 (1:10,000, Fisher 84547) and Streptavidin Dylight 800 (1:10,000, Fisher 21851). Quantification of protein expression levels was carried out following Odyssey Infrared Imaging System protocols. Scans of full-length Western blot membranes are provided in Supplementary Figs. 11–13.
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4

Quantitative Western Blot Analysis

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Quantitative Western blot was performed using Odyssey Infrared Imaging System (Licor). Primary antibodies used in this study include rabbit anti-MeCP2 C-terminus (1:4000, in house), mouse anti-MeCP2 N-terminus (1:4000, Sigma M7433), mouse anti-NeuN (1:500, Millipore MAB377), rabbit anti-Avi tag (1:5000, Abcam ab106159, listed as anti-Tavi in main text, detects the minimal peptide substrate of biotin ligase BirA regardless of biotinylation status), rabbit anti-HDAC3 (1:1000, Santa Cruz sc-11417), rabbit anti-TBLR1 (1:1000, Bethyl A300–408A), rabbit anti-Sin3A, (1:500, Thermo Scientific PA1-870), rabbit anti-Histone H3 (1:1000, Abcam ab1791), and rabbit anti-TBP (1:1000, Cell Signaling #8515). Secondary antibodies include anti-rabbit IRDye 680LT (1:10,000, Licor), anti-mouse IRDye 800CW (Licor), Streptavidin Dylight 650 (1:10,000, Fisher 84547) and Streptavidin Dylight 800 (1:10,000, Fisher 21851). Quantification of protein expression levels was carried out following Odyssey Infrared Imaging System protocols. Scans of full-length Western blot membranes are provided in Supplementary Figs. 11–13.
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