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Dacinostat

Manufactured by Selleck Chemicals

Dacinostat is a chemical compound used as a laboratory tool for research purposes. It functions as a histone deacetylase (HDAC) inhibitor, which is a class of enzymes involved in the regulation of gene expression. The core function of Dacinostat is to inhibit HDAC activity, but its specific applications and intended uses are not provided in this factual and unbiased description.

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3 protocols using dacinostat

1

Epigenetics Compound Library Composition

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A detailed list of all compounds (n = 128) included in the epigenetics compound library (L1900, Selleckchem, Houston, TX, USA) is presented in the supplementary files (Table S3). The histone deacetylase (HDAC) inhibitors romidepsin (S3020, Selleckchem), panobinostat (S1030, Selleckchem), dacinostat (S1095, Selleckchem), quisinostat (S1096, Selleckchem), and fimepinostat (S2759, Selleckchem) were dissolved in DMSO.
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2

Epigenetics Compound Library Screening

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We used an ‘epigenetics compound library’ from Selleckchem, containing 181 compounds (Supplementary Table 5), dissolved in DMSO or water (172 and 9 compounds, respectively). NPCs were plated at a density of 7.5 × 104 cells/cm2 in 96-well plates coated with gelatin 0.1%. Six hours later, compounds were added to each well at a final concentration of 10 µM and 0.5% of solvent (DMSO or water). Cells were collected 48 h later for lysis, and reverse transcription was performed using the Cells-to-Ct kit (Applied Biosystems) directly in 96-well plates. The allelic expression ratio of Bag3 was then measured using pyrosequencing after PCR. The 11 best hits were then tested following the same protocol, in 24-well plates. The dose-response curves were performed in 6-well plates, with various concentrations of Dacinostat and Decitabine and a constant concentration of DMSO (0.5%). The final validation was performed in a six-well plate format, using new batches of Dacinostat and Decitabine (Selleck Chemicals), dissolved in DMSO; cells were treated for 24 h with 10 µM of drugs, in 0.5% DMSO. For assays in 24-well and six-well plates, cells were harvested and RNAs extracted using the Qiagen RNeasy plus mini kit, as described earlier.
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3

Epigenetic Compound Screening in NPCs

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We used an "epigenetics compound library" from Selleckchem, containing 181 compounds (Supplementary Table 6), dissolved in DMSO or water (172 and 9 compounds respectively). NPCs were plated at a density of 7.5x10 4 cells/cm 2 in 96-well plates coated with gelatin 0.1%. Six hours later, compounds were added to each well at a final concentration of 10 µM and 0.5% of solvent (DMSO or water). Cells were collected 48 h later for lysis and reverse transcription was performed using the Cells-to-Ct kit (Applied Biosystems) directly in 96-well plates. The allelic expression ratio of Bag3 was then measured using pyrosequencing after PCR. The 11 best hits were then tested following the same protocol, in 24-well plates. The dose-response curves were performed in 6-well plates, with various concentrations of Dacinostat and Decitabine and a constant concentration of DMSO (0.5%). The final validation was performed in a 6-well plate format, using new batches of Dacinostat and Decitabine (Selleck Chemicals), dissolved in DMSO; cells were treated for 24 h with 10 µM of drugs, in 0.5% DMSO. For assays in 24-well and 6-well plates, cells were harvested and RNAs extracted using the Qiagen RNeasy plus mini kit, as described earlier.
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