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Agarose type 3 a

Manufactured by Merck Group

Agarose Type III-A is a purified, highly stable agarose for use in gel electrophoresis applications. It is suitable for separation and analysis of nucleic acids and proteins.

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2 protocols using agarose type 3 a

1

Soft Agar Colony Formation Assay

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Six-well plates were pre-coated with 0.6% agarose Type III-A (Sigma). Cells were mixed with 0.4% top agar and added to pre-coated plates at 3 × 104 cells/ well. After solidifying, 2 ml of liquid media containing SFN or DMSO was added to each well. Each treatment was performed in triplicate. Cells were incubated at 37°C for 2 weeks, and stained with 0.5% crystal violet in 6% formaldehyde. Two independent experiments were performed as biological replicates.
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2

Two-photon calcium imaging of whisker-evoked neuronal activity

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Neuronal ensembles in superficial layers of the principal whisker barrel field mapped by intrinsic signal imaging were bolus-loaded with the AM ester form of Oregon Green BAPTA-1 by pressure injection (OGB-1; 1 mM solution in Ca 2+ -free Ringer's solution; 2-min injection at 150-200 µm depth) as described previously 53 . The craniotomy was then filled with agarose (type III-A, 1% in Ringer's solution; Sigma) and covered with an immobilized glass plate. Two-photon Ca 2+ imaging was performed with a Scientifica HyperScope two-photon laser scanning microscope one hour after bolus loading using a Ti:sapphire laser system at 900 nm excitation (Coherent Chameleon; approx. 120 femtosecond laser pulses). Two-channel fluorescence images of 256x128 pixels at 11.25 Hz (HyperScope galvo-mode) were collected with a 16x water-immersion objective lens (Nikon, NA 0.8). 3 to 5 separate spots (i.e. Figure 1C top row) have been imaged per animal. Per imaging spot, both a 300s-long continuous recording of spontaneous activity as well as 10 trials of 20s-long evoked activity recorded for each of single-and multi-whisker stimulation paradigms. Data acquisition was controlled by ScanImage 54 . Duration of Ca 2+ imaging recordings varied between 3 to 4 hours.
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