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7 protocols using f4 80 apc efluor 780

1

Comprehensive Immune Cell Profiling by Flow Cytometry

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The following monoclonal antibodies were used to stain cells: anti-CD11b v450, F4/80 APCeFluor780, Ki67 eFluor660, CD19 PerCpCy5.5, Thy1.1 PeCy7 (eBiosciences), CD11c fluorescein isothiocyanate (FITC) or allophycocyanin (APC), CD24 BV711, CD45.2 v500, CD103 biotin, I-Ab phycoerythrin (PE), Ly6C PeCy7, PD-L1 APC, streptavidin PerCpCy5.5, CD4 APC-H7, CD8 v450, CD62L Alexa700, IFN-γ APC, Vβ3 PE (BD Biosciences), or CD64 PE (BioLegend). Exclusion of propidium iodide was used to gate live cells. Cells were enumerated using CountBright absolute counting beads (Thermo Fisher Scientific). Samples were acquired using the Fortessa flow cytometer (BD Biosciences) and analyzed using FlowJo software (Treestar).
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2

Isolation and Characterization of Bone Marrow-Derived and Peritoneal Macrophages

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To obtain bone-marrow derived macrophages, femurs from control mice, or mice carrying floxed alleles of Slc2a1 or Glut1myc knock-in mice were removed and flushed with 5mL of sterile PBS containing 5% FBS28 ,29 . The cell suspension was centrifuged, treated with red blood cell lysis buffer, washed, and then plated onto sterile petri dishes in DMEM containing 10% L929 media, 10% FBS and 1% penicillin/ streptomycin/glutamine (PSQ). Media was replenished every 2 to 3 days and differentiated cells were used at day 6 post-harvest. To delete Slc2a1, macrophage cultures were treated with TAT-Cre (EMD Millipore) according to manufacturer’s instructions. For staining, BMDMs were stained with F4/80 APC-eFluor 780 (eBioscience, Cat#: 47–4801-80) and subsequently stained with Myc PerCP antibody (Novus Biologicals, 9E10 Cat#: NB600–302PCP) or fixed and permeabilized using FoxP3/Transcription Factor Staining Buffer Set (eBioscience), and intracellular staining was performed using CD206 PE (BioLegend, Cat#: 141706). Resident peritoneal macrophages were obtained by flushing the peritoneal cavity of mice with 10mL of cold PBS containing 5% FBS. Collected cells were spun down, resuspended in X-VIVO 10 (Lonza), and plated at a concentration of 5×105 cells per well. Floating cells were removed the next day, and remaining peritoneal macrophages were used 2 days after isolation.
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3

Dissecting and Sorting Mouse Lung Cells

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Mouse lung or tumors were dissected and enzymatically digested for 30 min while being shaken at 37°C in a digestion mix containing 0.25% collagenase II (Gibco) and 1 U/ml dispase (Gibco) in PBS. Cell suspensions were filtered through a 100-μm cell strainer followed by washing with 1% FCS in PBS. Antibodies used were as follows: CD31-PE (MCA2388PE; Serotec), CD45-APC (17-0451; eBioscience), CD4-PeCy7 (25-0041; eBioscience), CD8-PerCp-Cy5.5 (45-0081; eBioscience), CD45-FITC (553079; BD), CD19-PE (12-0193; eBioscience), Ly6G-APC (127613; Biolegend), F4/80-APC-efluor 780 (47-4801; eBioscience), CD206-PE (MCA2235PET; AbD Serotec), CD11c-FITC (557400; BD), CCR2-APC (150627; Biolegend). Cells were sorted on an S3e cell sorter (BioRad) or FACSCanto (BD).
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4

Analyzing Macrophage Uptake of Apoptotic Cells

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Six million apoptotic Jurkat cells, stained with CypHer5E, were intraperitoneally injected in 300μl volume per mouse, or as control the X-VIVO 10 media alone. At indicated times post-injection, mice were euthanized, and the peritoneal lavage was collected by 10mL of PBS + 10% FBS. The collected cells were stained with CD11b PE-Cy7 (eBioscience, Cat#: 25–0112-82) and F4/80 APC-eFluor 780 (eBioscience, Cat#: 47–4801-80), and the uptake of the injected CypHer5E positive apoptotic cells by CD11b+ F4/80hi cells was assessed by flow cytometry. For sequencing or other types of analysis of the responses of macrophages, the peritoneal macrophages were isolated using Macrophage Isolation Kit purchased from Miltenyi Biotec. To test the effect of drugs targeting SLC2A1 and SLC16A1 in vivo engulfment, mice were treated with STF-31 (Santa Cruz #sc-364692, 10mg/kg) or SR13800 (EMD Millipore # 509663, 10mg/kg) 1 h before apoptotic cell or IgG-coated cell administration. For quantitative RT-PCR, the cells collected were lysed for RNA isolation.
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5

Analyzing Macrophage Uptake of Apoptotic Cells

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Six million apoptotic Jurkat cells, stained with CypHer5E, were intraperitoneally injected in 300μl volume per mouse, or as control the X-VIVO 10 media alone. At indicated times post-injection, mice were euthanized, and the peritoneal lavage was collected by 10mL of PBS + 10% FBS. The collected cells were stained with CD11b PE-Cy7 (eBioscience, Cat#: 25–0112-82) and F4/80 APC-eFluor 780 (eBioscience, Cat#: 47–4801-80), and the uptake of the injected CypHer5E positive apoptotic cells by CD11b+ F4/80hi cells was assessed by flow cytometry. For sequencing or other types of analysis of the responses of macrophages, the peritoneal macrophages were isolated using Macrophage Isolation Kit purchased from Miltenyi Biotec. To test the effect of drugs targeting SLC2A1 and SLC16A1 in vivo engulfment, mice were treated with STF-31 (Santa Cruz #sc-364692, 10mg/kg) or SR13800 (EMD Millipore # 509663, 10mg/kg) 1 h before apoptotic cell or IgG-coated cell administration. For quantitative RT-PCR, the cells collected were lysed for RNA isolation.
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6

Immune Cell Profiling by Flow Cytometry

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The red blood cells were removed from the peripheral blood collected by cardiac puncture, by sedimentation in 6% (w/v) Dextran T500 (GE Healthcare, Hempstead, UK) followed by lysis in Red cell lysis buffer (Sigma Aldrich, St. Lois, MO). The blood leukocytes and the intraperitoneal cell suspension were thereafter stained with CD115-PE-Cy7, CXCR4-eFluor450, F4/80-APC-eFluor780, CD49d-PE (all from eBioscience), Ly6G-FITC (clone 1A8, BD Bioscience) and VEGFR-1 (APCconjugated in house, R&D Systems). Flow cytometric analysis was carried out on an LSR II (BD Bioscience) and all data was processed with FlowJo (TreeStar, Ashland, OR) software.
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7

Isolation and Characterization of Bone Marrow-Derived and Peritoneal Macrophages

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To obtain bone-marrow derived macrophages, femurs from control mice, or mice carrying floxed alleles of Slc2a1 or Glut1myc knock-in mice were removed and flushed with 5mL of sterile PBS containing 5% FBS28 ,29 . The cell suspension was centrifuged, treated with red blood cell lysis buffer, washed, and then plated onto sterile petri dishes in DMEM containing 10% L929 media, 10% FBS and 1% penicillin/ streptomycin/glutamine (PSQ). Media was replenished every 2 to 3 days and differentiated cells were used at day 6 post-harvest. To delete Slc2a1, macrophage cultures were treated with TAT-Cre (EMD Millipore) according to manufacturer’s instructions. For staining, BMDMs were stained with F4/80 APC-eFluor 780 (eBioscience, Cat#: 47–4801-80) and subsequently stained with Myc PerCP antibody (Novus Biologicals, 9E10 Cat#: NB600–302PCP) or fixed and permeabilized using FoxP3/Transcription Factor Staining Buffer Set (eBioscience), and intracellular staining was performed using CD206 PE (BioLegend, Cat#: 141706). Resident peritoneal macrophages were obtained by flushing the peritoneal cavity of mice with 10mL of cold PBS containing 5% FBS. Collected cells were spun down, resuspended in X-VIVO 10 (Lonza), and plated at a concentration of 5×105 cells per well. Floating cells were removed the next day, and remaining peritoneal macrophages were used 2 days after isolation.
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