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7 protocols using anti cd28 ab

1

Regulatory T Cell Isolation and Activation

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CD4+CD25+ Treg cells were purified from spleen with Miltenyi beads, and cultured in RPMI-1640 (Gibco, Grand Island, NY) supplemented with 10% FBS (Hyclone, Logan, UT), 10 mM HEPES (Sigma, St. Louis, MO), 1 mM sodium pyruvate (Sigma), 50 μM 2-ME (Gibco), 100 U/ml penicillin (Sigma) and 100 μg/ml streptomycin (Sigma). Cells were stimulated with 1ug/ml anti-CD3 Ab and 2ug/ml anti-CD28 Ab (eBioscience) and/or 50U rmIL-2 (Peprotech) for 72 hrs. Frequency and expression level of Foxp3 were measured by flow cytometry.
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2

Characterization of T and B cell subsets

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Sub-populations of T cells (CD28+CD95+ central memory, CD28CD95+effector memory, and CD4+CD25+Foxp3+ regulatory cells) and activated B cells
(CD3CD20+CD28+) in blood were evaluated.1 ,2 (link) For extracellular surface staining, cell suspensions were
incubated for 30 minutes at 4°C with fluorescein-conjugated mouse anti-human Abs as follows: CD3-FITC (1:40), CD4-FITC
(1:200), CD8-PerCp-Cy5.5 (1:200), CD25-APC, CD28-APC (1:200), CD95-PE (1:200), and CD20-PE (1:200). For intracellular Ab staining,
cell suspensions were incubated at 4°C with fluorescein-conjugated mouse anti-human Abs as follows: IFN-γ-PE (1:200,
30 minutes) and Foxp3-PE (1:200, 1 hour). Intracellular IFN-γ staining was performed after stimulation overnight with
anti-CD3 Ab (2.5 μg/mL) and anti-CD28 Ab (0.25 μg/mL) in the presence of GolgiPlug (brefeldin A; 1 μL/1 mL).
All Abs were purchased from eBioscience (San Diego, CA, USA), except CD3-FITC (from BD PharMingen, San Diego, CA, USA) and
anti-CD3 Ab (U-CyTech, Utrecht, The Netherlands). Data were acquired using a FACSCanto flow cytometer (Becton-Dickinson, Mountain
View, CA, USA) and analyzed using FlowJo software (Tree Star, Ashland, OR, USA) (Supplementary Figure S1). Data were presented as the absolute number of cells per unit volume or percentage of
peripheral blood mononuclear cells.
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3

Isolation and Stimulation of Memory T Cells

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All protocols were approved by the Yale Institutional Review Board (Protocol No. 0601000969). PBMCs were isolated from leukopacks obtained from the Red Cross (Philadelphia, PA) using density centrifugation as described previously and cryopreserved in liquid nitrogen. CD4+CD45RO+ T cells were isolated from thawed cryovials using magnetic bead separation kits (Miltenyi, Charlestown, MA, USA) with HLA-DR Ab (clone L243, Novus No. NB100-77855) and CD45RA Ab-negative depletion (10 μL per cryovial, eBiosciences, 14-0458-82, San Diego, CA, USA). Where indicated, flat-bottom 96-well microtiter plates were coated with anti-CD3 Ab (1 μg/mL, eBiosciences, No. 16003785) in sterile PBS at 4°C overnight, and the following day, isolated CD4+CD45RO+ T cells (Tmem) were pretreated with soluble anti-CD28 Ab (1 μg/mL, eBiosciences, No. 16-0281-82) or SAG (15 μM) for 1 h prior to addition to anti-CD3 Ab-coated plates. Tmem were stimulated for 48 h prior to use in downstream applications including TCR deep sequencing, single-cell proteomics, mass cytometry, and passive transfer into humanized mice.
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4

Regulatory T Cell Isolation and Activation

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CD4+CD25+ Treg cells were purified from spleen with Miltenyi beads, and cultured in RPMI-1640 (Gibco, Grand Island, NY) supplemented with 10% FBS (Hyclone, Logan, UT), 10 mM HEPES (Sigma, St. Louis, MO), 1 mM sodium pyruvate (Sigma), 50 μM 2-ME (Gibco), 100 U/ml penicillin (Sigma) and 100 μg/ml streptomycin (Sigma). Cells were stimulated with 1ug/ml anti-CD3 Ab and 2ug/ml anti-CD28 Ab (eBioscience) and/or 50U rmIL-2 (Peprotech) for 72 hrs. Frequency and expression level of Foxp3 were measured by flow cytometry.
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5

Generation of Monocyte-Derived Dendritic Cells

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Peripheral blood samples obtained from human subjects were free of Hp infection as determined by using the carbon 14 urea breath test (C14 UBT). CD14+ cells purified by sorting using anti-CD14-labeled magnetic beads (MACS, Miltenyi, Germany) from peripheral blood of healthy donors were cultured in the presence of GM-CSF (50 ng/ml; PeproTech, Rocky Hill, NJ, USA) and IL-4 (10 ng/ml; PeproTech, Rocky Hill, NJ, USA) to generate monocyte-derived DCs. Autologous CD4+ T cells were isolated from the PBMCs using a negative selection kit (MACS Miltenyi Biotec, GmbH, Germany) and activated with a combination of anti-CD3 (5 ug/ml; eBioscience, San Diego, CA, USA) and anti-CD28 Abs (2 ug/ml; eBioscience, San Diego, CA, USA).
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6

CFSE-Based T Cell Proliferation Assay

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CellTrace 5(6)-carboxyfluorescein diacetate succinimidyl ester (CFSE) (Molecular Probes, Eugene, OR, USA) labeled human T cells were plated at 2 × 105 cells/well in 1 μg/mL of anti-CD3 Abs (eBioscience, San Diego, CA, USA)-coated plates in the presence of 0.5 μg/mL of anti-CD28 Abs (eBioscience) with or without indicated concentrations of recombinant SRA-ECD protein. In some case, 100 U/ml of IL-2 was added in the incubation. Proliferation was analyzed using FACS based on the dilution of fluorescence intensity. Supernatants were collected at 48 hours after the stimulation for cytokine assays using commercial ELISA kit (eBioscience).
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7

T Cell Differentiation Modulation

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PBT cells (1×106) were cultured in 300 µl of complete medium in 96-well plates, and soluble anti-CD3 (1 µg/ml) and anti-CD28 Abs (1 µg/ml)(both from eBioscience) were added to achieve TCR stimulation via the TCR/CD3 complex. The cells were cultured in RPMI 1640 supplemented with 10% fetal calf serum in a 5% CO2 humid atmosphere at 37°C for 5 days. To investigate the influence of cigarette smoke and the cholinergic system on the differentiation of T cells, CSE (0.33% = 1 µl of 100% CSE in 300 µl of medium) and an MR agonist or antagonist were added to the medium. The mAChRs were activated with muscarine (50 µM, the dose discussed in other papers was not suitable for our experimental conditions; this dose was selected based on a preliminary experiment, and toxicity and side effects were not observed at this dose). The mAChRs were inhibited with atropine (100 µM) from Sigma-Aldrich or Tocris. To derive Th1/Th2/Th17/Treg cells, the following exogenous cytokines were added: 20 ng/ml IL-12 for Th1; 4 ng/ml IL-4 for Th2; 20 ng/ml IL-6 and 5 ng/ml TGF-β1 for Th17; and 2 ng/ml IL-2 and 5 ng/ml TGF-β1 for Treg. All of the aforementioned recombinant human cytokines were purchased from Peprotech.
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