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6 protocols using sm 164

1

Measuring Caspase-3 Activation in LNCaP Cells

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LNCaP cells were seeded in a 96-well plate at 4000 cells per well, with up to 8 technical replicates per condition. After 24hrs, all cells were treated with NucView Caspase-3 Enzyme Substrate 488 (Biotium, 10402), and appropriate wells also treated with siRNA as described above, then placed in the Incucyte live cell imaging system (Sartorius). One image per well was taken every 2 h for 7 days. After 24 h in the Incucyte, the positive control cells were treated with either 50 µg/ml of TNFα (Sigma-Aldrich, H8916) + 100 nM of SM164 (Selleckchem, S7089), or 2 µM of Aphidicolin (Sigma-Aldrich, A0781). Integrated fluorescence intensity was calculated within the Incucyte Zoom software using the summed pixel intensity in calibrated units (CU) to determine the relative fluorescence units per image with the follow equation; CU x µm2/image. A significant change was calculated by one-way ANOVA, with each BRG1 on-target siRNA compared to the non-targeting control. The results were corrected for multiple comparisons with Dunnett’s test. A significant change is defined as ****p < 0.0001.
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2

Investigating Cell Death Signaling

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BMS-777607 and TAK-632 were purchased from SelleckChem (Houston, TX). Luminol (A8511), p-coumaric acid (C9008), Tween 20, and zVAD.fmk were from Sigma (St. Louis, MO). DMSO (sc-20258) was from Santa Cruz Biotechnology (Santa Cruz, CA). The following antibodies were used in this study: RIPK1 (Cell Signallng Technology [Danvers, MA], #3493); p-MLKL (S358) (Abcam (Cambridge, UK), ab187091); hMLKL (Abcam [Cambridge, UK], ab183770); and Actin (Santa Cruz Biotechnology (Santa Cruz, CA), sc-81178). Smac mimetic SM-164 was custom synthesized (SelleckChem [Houston, TX]) [7 (link)]. TNFα was from Cell Sciences (Newburyport, MA).
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3

Investigating TNFα-Mediated Cell Death

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Human recombinant TNFα (R&D Systems, Cat#210-TA-005); Recombinant mouse mTNFα (Cell sciences, Cat# CRT192C); Cycloheximide (Sigma, Cat# C-6255); SM-164 (Selleckchem, custom-synthesized); Birinapant (Selleck Chemicals, Cat# S7015); zVAD (Selleck Chemicals, Cat# S8102); Nec-1s (7-Cl-O-Nec-1) (Selleck Chemicals, Cat# S8641); GSK-872 (Sigma, Cat# 5303890001); Necrosulfonamide (Sigma, 480073); LPS (Sigma, Cat# L4391); IDN-6556 (Selleck Chemicals, Cat# S7775); Poly(I:C) (InvivoGen, Cat# tlrl-pic-5); 5Z-7-Oxozeaenol (Sigma, Cat# O9890); 5-fluorouracil (Selleck Chemicals, Cat# S1209); Necrosulfonamide (Selleck Chemicals, Cat# S825); and ELISA Kit for Human TNFα (BioLegend, Cat# 430206).
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4

Gab1 Knockdown in HT29 Cells

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HT29 cells were purchased from American Type Culture Collection (ATCC) and cultured in RPMI 1640 medium (Gibco) supplemented with 10% fetal bovine serum (FBS) (Gibco) along with 1% penicillin and streptomycin (HyClone) at 37°C and 5% CO2. HEK293T cells were purchased from ATCC and maintained in DMEM (Gibco) containing 10% FBS along with 1% penicillin and streptomycin at 37°C and 5% CO2. To construct Gab1-knockdown HT29 cell line, shGab1 cDNA were constructed into the PLKO1-puro vector (Addgene plasmid 8453) and packaged into lentiviruses. HT29 cells were infected with shGab1 lentivirus and then screened by puromycin.
For stimulation, cells were plated on 6-well plates at 5 × 105 cells per well overnight and then pretreated with RIPK1 inhibitor Nec-1s (10 μM; Selleck Chemicals) for 1 hour. After that, cells were stimulated with T/S/Z mix — TNF-α, 50 ng/mL (Novoprotein); SM-164, 50 nM (Selleck Chemicals); Z-VAD-FMK, 50 μM (Selleck Chemicals) — for the indicated time. Cell lysates and culture supernatant were further analyzed by Western blot.
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5

Comprehensive Necroptosis Signaling Pathway Analysis

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zVAD, HG-9-91-01, and YKL were purchased from MedchemExpress. Necrostatin-1 was from Calbiochem. GSK’872 and SM-164 were from Selleck. Protein A/G Magnetic Beads were purchased from Pierce. Lipofectamine 2000 was from Life Technologies. LPS and poly I:C were purchased from InvivoGen. Mouse and human recombinant TNF were purchased from Novoprotein. Propidium iodide (PI) and cycloheximide (CHX) was from Sigma. Human recombinant RIPK1 and RIPK3 were from AtaGenix. Elisa kits for TNF and IL-1β were purchased from R&D. ADP-Glo kinase assay kit was from Promega. Immunoblotting was performed with following antibody: anti-RIPK1 (610459, BD Biosciences); anti-hRIPK1 S166 (44590, Cell Signaling); anti-mRIPK1 S166 (31122, Cell Signaling); anti-hRIPK3 (13526, Cell Signaling); anti-mRIPK3 (2283, ProSci); anti-hRIPK3 S227 (91702, Cell Signaling); anti-mRIPK3 T231/S232 (91702, Cell Signaling); anti-hMLKL (ab184718, Abcam); anti-mMLKL (AP14272b, ABGENT); anti-hMLKL S358 (ab187091, Abcam); anti-mMLKL S345 (ab196436, Abcam); anti-GAPDH (sc-32233, Santa Cruz); anti-cleaved Caspase-8 Asp387 (8592, Cell Signaling); anti-cleaved Caspase-3 (9661, Cell Signaling); anti-GSDME (ab215191, Abcam), anti-GSDMD (ab209845, Abcam), anti-Caspase-1 (AG-20B-0042-C100, AdipoGen), anti-Caspase-11 (NB120-10454, Novus).
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6

Apoptosis and Necroptosis Signaling in B Cells

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For analysis of apoptosis signaling, WT or DKO splenocytes were incubated for 6 h in RPMI 1640 complete medium with 0.1% FBS at 37°C and 5% CO2. Cells were then subjected to surface staining for GC and memory B cell markers, followed by intracellular staining for cleaved caspase-9 (9509) or caspase-3 (9661) (Cell Signaling Technology). The cells were then incubated with secondary antibodies and analyzed by flow cytometry. For analysis of necroptosis signaling, WT or DKO splenocytes were first pre-incubated with 20 µM z-VAD-FMK (ALX-260–020-M001, ENZO Life Sciences) for 1 h in RPMI 1640 medium containing 10% FBS at 37°C and 5% CO2. 1 SM-164 (1 µM; S7089, Selleckchem) was then added to the cells, and incubation was continued for 10 h at 37°C and 5% CO2. Cells were then subjected to surface staining for GC and memory B cell markers, followed by intracellular staining for phospho-Ripk3 (Thr231/Ser232) (Cell Signaling Technology) and analyzed by flow cytometry.
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