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33 protocols using caspase 8

1

Quantifying Caspase Enzyme Activities

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Caspase-3, -8 and -9 activities were measured using Caspase-3 (#K106), caspase-8 (#K113), and caspase-9 (#K119) assay kits from BioVision, Inc. (Milpitas, CA, USA). After treatment, cellular proteins were extracted by using cell lysis buffer and then quantified using a bicinchoninic acid protein assay kit (Thermo Fisher Scientific, Inc., #23227, Waltham, MA, USA). Subsequently, 150 ∼ 200 ug cellular proteins were reacted with corresponding substrates (DEVD-pNA, IETD-pNA and LEHD-pNA). Caspase-3, -8 and -9 activities were subsequently measured as the optical density of the cleaved substrate at 405 nm using a microplate reader (Bio-Tek Instruments, Inc., #ELX-800, Winooski, VT, USA).
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2

Caspase-8 and Caspase-9 Activity Assay

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Caspase-8 and caspase-9 Colorimetric Assay Kits (BioVision) were used to evaluate Caspase-8 and -9 activities, respectively. After ARG treatment, the cell lysates were prepared following manufacturer's instructions. Then, the release of ρ-nitroaniline (ρNA) was measured at 405 nm with a spectrophotometer. Results are represented as the percentage of change in activity compared with the untreated control.
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3

Ginseng and Cisplatin Apoptosis Assay

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The standards of ginsenoside Rb3 and cisplatin was obtained from Aladdin (China). Hematoxylin and eosin were purchased from Nanjing Jiancheng (China). The primary antibody of TGF-β, Smad2, Smad3, p-Smad2, p-Smad3, Bcl-2, Bax, cleaved PARP, cleaved Caspase 3, cleaved caspase 8, cleaved caspase 9, and β-actin were supplied from Abcam (USA). Annexin V-FITC apoptosis kit was purchased from BD (USA). JC-1 dye was obtained from Solarbio (China). Caspase 3, caspase 8, and caspase 9 colorimetric assay kits were purchased from BioVision (USA).
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4

Caspase Colorimetric Assay Protocol

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Caspase-3, caspase-8, and caspase-9 colorimetric assay kits (BioVision, Mountain View, CA, USA) were used to detect the activity of the respective caspases. Briefly, BPH-1 cells (3 × 106 cells) were collected and lysed in lysis buffer. Cytosolic extracts (200 μg) were incubated with reaction buffer, dithiothreitol, and the respective substrate at 37 °C. Caspase activity was determined through the measurement of absorbance at 405 nm using a microplate reader (Bio-Rad).
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5

Quercetin Modulates Signaling Pathways

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Approximately 2 × 106 cells were managed for 48 h at the concentration of 100 μmol/L quercetin. Western blotting was performed as described previously [4 (link)]. Antibodies against GSK-3β/p-GSK-3β, β-catenin/p-β-catenin, Lef-1, cyclin D1, and BCR-ABL /p-BCR-ABL were provided form Santa Cruz company (CA, USA), PPAR-δ from Millipore (Boston, USA), caspase-3, caspase-8, and caspase-9 from BioVision (San Francisco, USA), β-actin from HaiGene company (Heilongjiang, China).
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6

Caspase Activity Colorimetric Assays

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Caspase-3, Caspase-8 and Caspase-9 Colorimetric Assay Kits (Biovision, CA, USA) were utilized to detect the Caspase-3, -8 and -9 activities, respectively. The use of kits is in accordance with the manufacturer's protocols.
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7

Immunohistochemical Analysis of Liver Tissue

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Deparaffinized and rehydrated liver tissue sections were immersed in citrate buffer for antigen retrieval and then incubated with 3% hydrogen peroxide for 10 min to quench endogenous peroxidase activity. Next, sections were blocked with 10% goat serum albumin and incubated with a primary antibody targeting alpha-smooth muscle actin (α-SMA, 1:100; Abways, Shanghai, China), interleukin-1 beta (IL-1β, 1:100; ABclonal, Wuhan, China), YAP (1:100; Santa Cruz Biotechnology, Inc., California, USA), P-YAP (1:100; Abways, Shanghai, China), glutathione peroxidase 4(GPX4, 1:100; Abways, Shanghai, China), solute carrier family 7 members 11 (SLC7A11, 1:250; Proteintech, Wuhan, China), receptor-interacting serine-threonine kinase 3 (RIPK3, 1:100; Signalway antibody, College Park, USA), or caspase8 (1:200; Abcam, Cambridge, UK) at 4 °C overnight. After washing with phosphate-buffered saline (PBS) three times, sections were incubated with the corresponding horse radish peroxidase (HRP)-conjugated secondary antibody at room temperature for 30 min. After washing, sections were visualized with 3,3′-diaminobenzidine (DAB) and stained with hematoxylin. Images were captured and integral optical density (IOD) was determined using Image-Pro Plus 6.0 software. A total of ten non-overlapping fields were analyzed from each specimen.
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8

Exosome Isolation and Characterization

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Lipofectamine 2000, Dulbecco's modified Eagle's medium (DMEM), α‐minimal essential medium (α‐MEM), Opti‐MEM, fetal bovine serum, horse serum, penicillin‐streptomycin, 0.25% trypsin‐EDTA, DiO dye, Exosome Spin Columns, Micro BCA Protein Assay kit, as well as CD11b, CD86, CD206, CD11c, CD80 monoclonal antibodies were purchased from Thermo Fisher Scientific, USA. Calnexin, CD9, CD63 and CD81, FASL, Caspase‐3, Caspase‐8, and PARP antibodies were purchased from Abcam. 3‐(4, 5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyltetrazolium bromide (MTT), RNAlater, dimethyl sulfoxide (DMSO), LysoTracker Green DND‐26, isothiocyanate‐labeled phalloidin and Hoechst 33342 were purchased from Sigma Aldrich, USA. Filter membranes and ultrafilter tubes were purchased from Millipore (Shanghai, China). Cy5‐labeled siRNA (Cy5‐NC), siPLK1 (targeting PLK1), and siPD‐L1 (targeting PD‐L1) were supplied by Suzhou Ribo Life Science Co., Ltd. (Suzhou, China) or Suzhou Biosyntech Co., Ltd (Suzhou, China). All the primers were provided by BioSune Co., Ltd (Shanghai, China). DCFH‐DA, Annexin V‐FITC/PI Apoptosis Detection Kit, and Hieff qPCR SYBR Green Master Mix were purchased from Yeasen (Shanghai, China). Chlorin e6 (Ce6) was purchased from Macklin Biochemical Technology Co., Ltd (Shanghai, China). Optimal cutting temperature (OCT) compound was from Sakura Finetek USA, Inc. (Torracne, CA90501, USA).
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9

Western Blot Analysis of Apoptosis Markers

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Kidney tissues were lysed in RIPA buffer, run on a 10% SDS-polyacrylamide electrophoresis gel and transferred onto a nitrocellulose membrane (Hybond C Extra, Amershan Biosciences, Little Chalfon, USA). The membrane was incubated in a blocking buffer A (PBS, 5% nonfat milk and 0.1% Tween-20) and incubated overnight at 4 °C with primary rabbit anti-rat Bax (diluted 1:300; Abcam, USA), Bcl-2 (diluted 1:300; Abcam, USA), Caspase-3 (diluted 1:200; Abcam, USA), Caspase-8 (diluted 1:300; Abcam, USA) and Caspase-9 (diluted 1:200; Abcam, USA) antibody. Then the membrane was washed once for 15 min and twice for five min in PBS, followed by a peroxidase-conjugated sheep anti-rabbit IgG (Santa Cruz Biotechnology) at a 1:10000 dilution. At last, the membrane was developed with a chemiluminescent agent (ECL). Each membrane was stripped and probed with mouse primary anti-β-actin antibody (Sigma, USA) to confirm and estimate the loading and the transfer. We used a bio-image analysis system (Bio-Rad, USA) to analyze the bands.
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10

Comprehensive Antibody Analysis Protocol

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All antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA) and used as follows: BAX (no. ab32503, diluted: 1:1000), BCL-2 (no. ab32124, diluted: 1:1000), CASPASE8 (no. ab32397, diluted: 1:1000), PARP1 (no. ab32138, diluted: 1:1000), GADD45A (no. ab203090, diluted: 1:500), p38/MAPK (no. ab170099, diluted:1:1000), phospho-p38MAPK (T180 + Y182) (no. ab195049, diluted: 1:1000), ERK1/2 (no. ab184699, diluted: 1:1000), phospho-ERK 1/2 (T202 + Y204) (no. ab223500, diluted: 1:1000) were purchased from Abcam (Cambridge, USA). Cleaved-caspase 8 (no. 8592, diluted: 1:1000), GAPDH (no. 5174), CDC2 (no. 28439, diluted: 1:1000), CYCLINB1 (no. 4138, diluted: 1:1000), PLK1 (no. 4535, diluted: 1:1000), MMP-1 (no. ab137332, diluted: 1:1000), MMP-9 (no. 13667s, diluted: 1:1000), VEGF-1 (no. 2893s, diluted: 1:1000). Anti-rabbit and anti-mouse LgG (H + L) (Dylight (TM) 800 4×PEG Conjugate) secondary antibodies used in this study were purchased from Cell Signaling Technology and used at a 1:30000 dilution in the experiments.
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