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192 protocols using cyclosporin a

1

Generating EBV-infected Lymphoblastoid Cell Lines

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EBV-infected LCL were generated from each subject by incubating 3–5 ×
106 washed PBMC with the B95-8 strain of EBV overnight in
1 ml RPMI-C supplemented with 2 μg ml−1cyclosporin A (Sigma), as previously described.19 (link) LCL were cultured in this medium for a month followed by
at least another 2 months of culture in RPMI-C without cyclosporin A until
confluent, rapidly growing lines were obtained. Each was grown for the final week
of culture in complete phenol-red-free RPMI and checked by flow cytometry to
ensure there was no evidence of T-cell contamination, as determined by CD3
expression or intracellular IFN-γ expression, before being used in T-cell
assays. To determine the frequency of lytically infected cells in LCL we used flow
cytometry to measure expression of the EBV immediate early protein BZLF1 with the
BZ1 monoclonal antibody (Santa Cruz Biotechnology, Dallas, TX, USA) in LCL of 19
healthy EBV-seropositive subjects and 56 patients with MS at the same time as the
measurement of the LCL-specific T-cell frequency.
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2

Measuring Cytosolic Calcium in HL-7702 Cells

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Cultured HL-7702 cells were seeded and transfected in a 24-well plate for 36 h with the addition of 1 µM cyclosporin A (CsA) (Milipore) or dimethyl sulfoxide (DMSO) for 12 h. Levels of cytosolic calcium were measured by Flou-4 calcium imaging kit (Molecular Probes, Eugene, OR, USA) following the manufacturer's instructions. Fluorescence images were obtained (excitation 494 nm/emission 506 nm) by confocal laser scanning microscopy (Leica SP5; Leica, Solms, Germany). Relative fluorescence intensity of each group was measured by LAS AF Lite software (Leica).
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3

Cytokine-Mediated Immune Regulation

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Murine or human M-CSF, murine or human TNFα were purchased from PeproTech. FK506 was purchased from invitrogen and Cyclosporin A (CsA) was purchased from Millipore.
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4

CD8+ T Cell Activation and Proliferation

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Naïve CD44low CD8+ T cells were purified from the spleen by negative selection using the BD-IMag system (BD Biosciences, San Jose, California, U.S.A.). To measure G0S2 expression, CD8+ T cells were activated in 96-well plates coated with 10 μg/ml anti-CD3 (BD Biosciences, San Jose, California, U.S.A.) in the absence or presence of rapamycin (Sigma-Aldrich), LY294002 (Sigma-Aldrich, St Louis, Missouri, U.S.A), cyclosporin A (Millipore, Billerica, Massachusetts, U.S.A.), or PD98059 Millipore, Billerica, Massachusetts, U.S.A.) for 24 hours.
For in vitro stimulation, CD44low CD8+ T cells labeled with 4 μM CFSE (LifeTechnologies, Grand Island, New York, U.S.A.) or 5 μM eFluor 670 (eBioscience, San Diego, California, U.S.A.) were cultured for 2 or 3 days at a density of 1×105 (link) cells per well in RPMI 1640 medium containing 10% (vol/vol) FBS in 96-well plates coated with 10 μg/ml anti-CD3 (BD Biosciences, San Jose, California, U.S.A.) in the presence of anti-CD28 (2 μg/ml; BD Biosciences). For homeostatic proliferation, CFSE-labeled CD44low CD8+ T cells from CD45.2+ WT or G0s2−/− mice were transferred into sub-lethally irradiated B6.SJL (CD45.1+) mice. Dilution of CFSE dye was analyzed by flow cytometry and the proliferation index (PI) was calculated using FlowJo software (TreeStar, Ashland, Oregon, U.S.A.).
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5

CD8+ T Cell Activation and Proliferation

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Naïve CD44low CD8+ T cells were purified from the spleen by negative selection using the BD-IMag system (BD Biosciences, San Jose, California, U.S.A.). To measure G0S2 expression, CD8+ T cells were activated in 96-well plates coated with 10 μg/ml anti-CD3 (BD Biosciences, San Jose, California, U.S.A.) in the absence or presence of rapamycin (Sigma-Aldrich), LY294002 (Sigma-Aldrich, St Louis, Missouri, U.S.A), cyclosporin A (Millipore, Billerica, Massachusetts, U.S.A.), or PD98059 Millipore, Billerica, Massachusetts, U.S.A.) for 24 hours.
For in vitro stimulation, CD44low CD8+ T cells labeled with 4 μM CFSE (LifeTechnologies, Grand Island, New York, U.S.A.) or 5 μM eFluor 670 (eBioscience, San Diego, California, U.S.A.) were cultured for 2 or 3 days at a density of 1×105 (link) cells per well in RPMI 1640 medium containing 10% (vol/vol) FBS in 96-well plates coated with 10 μg/ml anti-CD3 (BD Biosciences, San Jose, California, U.S.A.) in the presence of anti-CD28 (2 μg/ml; BD Biosciences). For homeostatic proliferation, CFSE-labeled CD44low CD8+ T cells from CD45.2+ WT or G0s2−/− mice were transferred into sub-lethally irradiated B6.SJL (CD45.1+) mice. Dilution of CFSE dye was analyzed by flow cytometry and the proliferation index (PI) was calculated using FlowJo software (TreeStar, Ashland, Oregon, U.S.A.).
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6

Comprehensive Cellular Analysis Toolkit

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Newport Green™ DCF diacetate, MitoSOX™ Red were acquired from Molecular Probes, Inc. (Eugene, OR, USA). TPEN (N,N,N′,N′-tetrakis(2-pyridinylmethyl)-1,2-ethanediamine), acridine orange, cyclosporin A, 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acid (CHAPS), EdU (5-ethynyl-2′-deoxyuridine), horseradish peroxidase, Triton-X, dithiotreitol (DTT), propidium iodide and 4’,6-Diamidino-2-Phenylindole (DAPI) were obtained from Sigma-Aldrich (St. Louis, MO, USA). WST-1 was purchased from Roche Diagnostics (Manheim, Germany). Caspase-3 inhibitor z-devd-fmk was from ICN Biomedicals Inc. (Irvine, CA, USA). Primary and secondary antibodies were from Cell Signaling Technology (Danvers, MA, USA). All other chemicals were of the highest analytical grade.
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7

Evaluating Drug Transport Inhibitors

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Calcein AM and cyclosporin A were obtained from Sigma-Aldrich (St. Louis, MO). Rhodamine 123, paclitaxel, vinblastine, doxorubicin, and cisplatin were purchased from Wako (Tokyo, Japan). Tariquidar was purchased from AdooQ BioScience (Irvine, CA). CellTiter 96 AQueous One Solution Reagent was purchased from Promega (Madison, WI). [125I]-Iodoarylazidoprazosin (IAAP) was obtained from Perkin-Elmer Life Science (Wellesley, MA).
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8

Mitochondrial Respiration Assay

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Cyclosporin A (CsA), rotenone, rhodamine 123 (Rh123), dithiothreitol (DTT), monobromobimane+ (MBM+), hematoporphrin (HP), oligomycin, valinomycin and MOPS were purchased from Sigma (St. Louis, MO). All other reagents were of analytical reagent grade, and all solutions were prepared with asepsis double-distilled water.
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9

Establishing EBV-Transformed Lymphoblastoid Cell Lines

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Ficoll-Paque Plus (VWR International, Radnor, PA, USA) was used to isolate peripheral blood mononuclear cells (PBMCs) from collected blood as previously described [20] (link). The generation of LCLs was carried out as previously described [9] (link). Briefly, PBMCs were incubated for 1 hr at 37°C with supernatant from the EBV B95.8 cell line, after which the cells were suspended in RPMI-1640 (Lonza, Basel, Switzerland) containing 10% fetal bovine serum (FBS, Sigma Aldrich, St Louis, MO, USA), 2 mM L-glutamine (Life Technologies), and 2 μg per ml cyclosporin A (Sigma Aldrich). The cells were plated at densities of 2.5 × 106 or 5 × 106 cells per well in 48-well plates. The media was supplemented weekly until the cells were expanded into a 25 cm2 flask. LCLs were used then cryopreserved in 10% DMSO (MP Biomedical, Irvine, CA, USA) 50% FBS and RPMI-1640. The LCLs undergo routine mycoplasma testing.
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10

Pharmacological Inhibitors for Cell Signaling

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SB202190, GSK2606414, thapsigargin (Tg), FK506, chloroquine (CQ), and cyclosporin A (CsA) were purchased from Sigma-Aldrich (St Louis, MO, USA). Torin 1 was from (Tocris-Biotechne, Minneapolis, MN, USA).
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