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425 protocols using dm il led

1

Comprehensive Analytical Techniques for Compound Characterization

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1H NMR and 13C NMR were measured using a nuclear magnetic resonance spectrometer (AVANCE III 500 MHz, Bruker, Germany). ESI-HRMS was recorded using high-resolution mass spectrometry (Thermo Scientific Q Exactive, Bruker, Germany). IR absorption spectra were recorded in the range of 4000–400 cm−1 on a WQF-510A FTIR spectrophotometer. UV/Vis spectra were recorded on a UV-3600i plus spectrophotometer (UV/Vis/NIR spectrophotometer, Shimadzu, Japan). CD spectra were recorded by circular dichromatic spectrometer (Chirascan/V100, Applied Photophysics, UK). In the MTT assay, the absorbance of each compound was measured at 570 nm using Multiskan GO (Thermofisher, Thermo Fisher Scientific, Waltham, MA, USA). AO/EB staining was performed under an inverted fluorescence microscope (DMIL LED, Leica, Germany). Cell apoptosis and ROS intensity were detected using the flow cytometry system (Beckman coulter CytoFLEX, Beckman Coulter, Pasadena, CA, USA). In addition, ROS intensity was also detected using an inverted fluorescence microscope (DMIL LED, Leica, Germany).
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2

Immunofluorescence Staining of Osteocalcin

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After 2 days of culture, the cells were washed twice with PBS and fixed with 4% Paraformaldehyde (PFA, Sigma–Aldrich) for 10 min at room temperature followed by three PBS washes. Plates were then sealed with parafilm and stored in the fridge until immunofluorescence. Cells were permeabilized with PBS containing 0.1% Triton (Sigma–Aldrich; TPBS) for 10 min and washed in PBS three times before being incubated with a blocking solution containing 10% donkey serum (Merck) in TPBS for 30 min. The blocking solution was then aspirated and the samples were washed three times in TPBS washes. The cells were then incubated with osteocalcin (1:200, Abcam, Cambridge, UK) in 10% donkey serum and 0.1% TPBS overnight at 4 °C. After 24 h, the primary antibody solution was decanted and the cells were washed three times with PBS and incubated with the secondary antibody Alexa Fluor 488 (1:500, Abcam) in 5% donkey serum and 0.2% TPBS for 1.5 h at room temperature. Following this, cells were incubated for 5 min with Hoechst (1:5000, Life Technologies, Scoresby, Australia) and three PBS washes were performed prior to mounting the coverslips on a glass slide. Cells were then visualized under a fluorescence microscope (Inverted Laboratory Microscope, Leica DM IL LED, Wetzlar, Germany).
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3

Microscopic Imaging of Yogurt Beverages

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Light micrographs of the yogurt-based beverages were obtained using a Leica DM IL LED inverted laboratory microscope equipped with a Leica DFC295 digital color camera (Leica microsystems Ltd., Milton Keynes, UK). The samples were observed through a 40×dry objective lens. Pictures were taken using the in-built 3 MP digital camera and picture analysis was performed using Leica application suite software (V.3.6.0).
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4

Spheroid Formation and Imaging Protocol

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Spheroid formation in hanging drops was observed by imaging daily using an inverted laboratory Leica microscope, a 4× or 10× objective, with attached Leica MC170 HD camera, and Leica Application Suite (LAS) software (Leica Microsystems, Milton Keynes, UK). Fluorescent images of embedded spheroids were obtained using the LEICA DM IL LED with the LEICA DFC360 FX 1.4 mega-pixel camera, a 4× or 10× objective, and the LAS X software. For each spheroid, lighting and focus were adjusted to provide maximal contrast between the 3D structure and background. The emission and excitation filters used for the CellTracker™ dyes are shown in Table 1.
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5

Morphometric Analysis of Wound Healing

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For morphometric analysis, the wound specimens were sectioned, stained with haematoxylin and eosin (H&E) according to the manufacturer’s protocol, and observed by light microscopy (Leica DM IL LED, Buffalo Grove, IL, United States). The thickness of granulation tissue was defined as the distance from the wounded dermal upper margin to the bottom of the area that is rich in cellular infiltration and revascularisation (18 (link)) (five measurement points per view). The thickness of the epidermis (imaged at ×200), granulation tissue (imaged at ×50), and the number of blood vessels (imaged at ×200) and follicles (imaged at ×50) were calculated in three randomly selected views per specimen using ImageJ software.
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6

Arsenic-Induced Blood Cell Morphology in C. striata

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The effect of arsenic on the morphology of blood cells of C. striata was studied by simple staining procedures. Briefly, a single drop of blood was placed on the surface of a clean and grease free microscopic slide at a distance of 2 cm from one end and carefully extended to form a uniform smear. Once prepared, the smear was air dried and fixed in 95% ethanol for ten minutes. Staining was done with a freshly prepared mixture of Giemsa stain (HiMedia, India) (0.5 ml of commercial liquid stain diluted in 9.5 ml distilled water) for 30 min. The slides were carefully washed with distilled water, air dried and examined under light microscope equipped with a digital camera (Leica DM IL LED).
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7

Citral Treatment Effect on Cell Morphology

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The density of 2 × 104 cells per well were seeded on to 96-well culture plates and allowed to growfor 24 h. Then different concentration of citral were treated as previously described33 (link). The morphological changes of cell images of both treated and untreated cells was captured a Leica DMIL LED equipped with an Integrated 5.0 Mega-Pixel MC 170 HD camera (Wetzlar, Germany).
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8

Senescence Assay in Monocytes

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Monocytes were seeded at 20 × 103 cells/well in Lab-tek chambers (Thermo Fisher Scientific) and incubated with CM in the presence or absence of LPS (1 μg/ml) at 37°C for 3 days. SA-β-Gal activity was measured using the cellular senescence staining kit (Cell Biolabs, San Diego, CA, United States). Cells were fixed with 0.25% glutaraldehyde in PBS for 5 min at room temperature and incubated with staining solution at 4°C overnight. Slides were mounted in Prolong Gold antifade reagent with DAPI (Molecular Probes, Invitrogen, Thermo Fisher Scientific) and examined under a microscope (Leica DM IL LED). Slides were photographed with a Leica DFC450 Digital Microscope Camera using the Leica Application Suite software.
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9

Measuring PDMS-PS Bonding Strength

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To evaluate PDMS/PS bonding strength, a PDMS-based microfluidic layer with a long square microchannel (100 μm × 100 μm) was fabricated and placed on a PS surface, followed by applying gentle pressure for removing any air between the surfaces. Then, water containing a red dye (for better visualization) was injected into the microfluidic channel at a rate of 1 μL min−1 using an accurate syringe pump (AL-1000, World Precision Instruments, USA). Fluid flow was monitored under an inverted microscope (Leica DM IL LED) and the length of the microchannel filled with the fluid immediately before leakage was measured. Bonding strength was calculated using the following equation25 : BondingStrength=28.4ηLqh-4+-γ3cosθPDMS+cosθPSh(1)
where the first term stands for the flow resistance in the microfluidic channel and the second term indicates the capillary pressure. In this equation, η , L , q , h and γ are dynamic viscosity of water, the filled length of the microchannel, flow rate, width or height of the microchannel and surface tension of the water. Also, θPDMS and θPS are water contact angles on PDMS and PS surfaces, respectively. The contact angles were measured to be ~ 110° and ~ 80° for PDMS and PS, respectively.
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10

Scratch Wound Assay in ECA109 Cells

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Horizontal lines (≥3 lines/holes) were marked with a marker pen at the bottom of the 6-well plate. The ECA109 cells of each group were digested with trypsin and re-suspended in the complete culture medium. The adjusted concentration of the cell suspension (3×105 cells/mL) was inoculated into a 6-well plate (200 µL/well) and incubated in a cell incubator until the monolayer cells were formed. Scratch wounds were manipulated with the tip of a 100 µL pipette to scrub the cells (the scratch was perpendicular to the horizontal line at the bottom of the plate) using when the cell density reached above 90%. Washed cells twice with PBS. DMEM medium was added to the cells to continue culture for 24 and 48 h. The migration of the cells at different time points was observed under an inverted microscope (Leica DM IL LED) and photographed. The average scratch width of the cells in each group was measured and calculated by ImageJ software (National Institutes of Health), and the relative migration distance of the cells was calculated.
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