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32 protocols using sw620

1

TLR4 Activation in Human Tumor Cell Lines

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The human tumor cell lines SW480 (primary colon adenocarcinoma), SW620 (metastatic colon adenocarcinoma), MDA-MB-231 (metastatic breast adenocarcinoma) and U87-MG (glioblastoma) were purchased from Sigma-Aldrich. Cells were grown in two different Dulbecco’s modified essential media (DMEM high glucose for SW480 and SW620 and DMEM low glucose for MDA-MB-231 and U87-MG) (Sigma-Aldrich) supplemented with 10% FBS (Gibco) and 1% penicillin/streptomycin solution (Gibco) at 37 °C with 5% CO2 in humidified air.
To activate TLR4 cells were incubated with [1 µg/ml] LPS (E. coli 055:B5 LPS, Sigma-Aldrich) for 24 hours, washed three times with PBS and then culture medium was replaced with fresh medium supplemented with 10% certified exosomes-free serum (Gibco). After 24 hours, supernatants were collected and stored at −20 °C until use, while cells were harvested, and their proliferation/viability was determined by the trypan blue exclusion assay.
Cell homogenates were analyzed for TLR4 expression by immunoblotting and the human anti-TLR4 (1:500, Cell Signaling) and anti-β-actin (1:10,000, Sigma-Aldrich) were used as primary antibodies.
All methods of analysis were carried out in accordance with the relevant guidelines and regulation with appropriate quality control.
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2

Cell Line Characterization for Cancer Research

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The following cell lines were used in the study: SW480, SW620, DLD-1, HT29, HCT116, LoVo (all human colon cancer), MC38 (mouse colon cancer), OE33 (human esophageal cancer), and HeLa (human cervical cancer). All the cell lines were purchased from American Type Culture Collection (ATCC), except for MC38 and OE33 which were purchased from Kerafast and Sigma, respectively. Early passage SW480, SW620, DLD-1, HT29, HCT116, and OE33 cell lines were cultured in Roswell Park Memorial Institute (RPMI-1640) media (R8758; Sigma). Early passage MC38, and HeLa cell lines were cultured in Dulbecco’s Modified Eagle Medium (DMEM) media (D2429; Sigma). All media were supplemented with 10% fetal bovine serum (FBS, 16000-044; Thermo Fisher), and 100 IU/ml penicillin/streptomycin (15140-122; Thermo Fisher). All cells were cultured under sterile conditions and maintained in a 37 °C incubator with 5% CO2, regularly tested for mycoplasma and genetically authenticated by CRUK Cancer Centre Genomics Facility, Leeds, UK. Cell lines were passaged upon reaching ∼80–90% confluency and their morphology was regularly checked to ensure the absence of cross contamination between cell lines or mycoplasma contamination. To determine cell number, the automated cell counter NucleoCounter NC-100 (Chemometec) or manual hemocytometers were used.
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3

CRC Cell Line Establishment and Interference

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Human CRC cell lines (LoVo, HCT‐116, SW620, SW480, Caco‐2, and HT‐29) were purchased from the Type Culture Collection of the Chinese Academy of Sciences (Shanghai, China). The culture mediums were supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Thermo Fisher Scientific), and prepared for specific cell lines as follows: McCoy's 5A culture medium (Sigma‐Aldrich, USA) for HCT‐116 and HT‐29 cell line, L‐15 culture medium (Thermo Fisher Scientific) for SW620 and SW480 cell line, F12K (Sigma‐Aldrich), and MEM (Thermo Fisher Scientific) culture medium for LoVo and Caco‐2 cell line, respectively. All the cell lines were cultured in a humidified atmosphere containing 5% CO2 at 37°C.
Short hairpin RNA (shRNA) was utilized to stably downregulate NDC80 expression in CRC cells. The sequences of shRNA and its negative control (NC) are designed as follows: shRNA:5′‐CATTCTTGACCAGAAATTA‐3′; NC:5′‐TTCTCCGAACGTGTCACGT‐3′. The lentivirus product was purchased from Genechem and transfection procedure was performed in 293T cells using Lipofectamine 2000 (Thermo Fisher Scientific) as described previously 13. Then, CRC cells in logarithmic phase were infected with lentivirus carrying shRNA or NC based on multiplicity of infection (MOI). The interference efficacy of shRNA was examined by Quantitative real‐time polymerase chain reaction (qRT‐PCR) and western blot.
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4

EGFR Expression in Colorectal Cancer Lines

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Caco-2 (EGFR+) and SW620 (EGFR−) colorectal cancer cell lines were purchased from CLS Cell Lines Service GmbH (Eppelheim, Germany) and were cultured in specific culture media suggested by the manufacturer and following standard aseptic procedures. In brief, Caco-2 cells were cultured in Eagle's minimum essential medium (EMEM) (Sigma-Aldrich, Irvine, UK) supplemented with l-glutamine, 1% nonessential amino acids, 1 mM sodium pyruvate, and 10% fetal bovine serum. SW620 cells were cultured in Dulbecco's modified Eagle's medium (DMEM) (Sigma-Aldrich, Irvine, UK) supplemented with 4.5 g L−1 glucose, 2 mM l-glutamine, and 10% fetal bovine serum. All the above-mentioned media were supplemented with 100 U mL−1 penicillin and 100 μg mL−1 streptomycin (Gibco). All the cell cultures were maintained at 37 °C with 5% CO2. As described in a previously published procedure13 (link) flow cytometry was used to verify the EGFR expression.
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5

5-FU Impacts on Colorectal Cancer Cells

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The effect of 5-FU on the level of SMAD4 and TGFB1 gene expression and on apoptosis induction or DNA damage in colorectal cancer was determined for three human colon cancer cell lines: CACO-2, SW480 and SW620, purchased at Sigma-Aldrich (Hamburg, Germany). The company provides a certificate of authenticity for the cell lines (European Collection of Authenticated Cell Cultures). According to the manufacturer’s data, the CACO-2 cells were originally derived from colon tissue obtained from a 72-year-old Caucasian male diagnosed with colorectal adenocarcinoma. The selected CACO-2 cell line was characterized for different molecular markers; the cells were found to show no structural changes within the SMAD4 gene. The SW480 cells were originally obtained from a 50-year-old man suffering from colorectal B adenocarcinoma, according to the Dukes classification; the cells were isolated from the primary tumor lesion and express epithelial growth factor. The SW620 cells are derived from the same patient as SW480, but were isolated from colorectal adenocarcinoma metastasis to the lymph node. They have a G > A mutation in codon 273 of p53, resulting in an amino acid substitution (His > Arg). The study plan is presented as additional material in Figure S1 in Supplementary Materials.
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6

Culturing and Characterizing Human Colon Cancer Cell Lines

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The SW620 and COLO205 human colon cancer cell lines were purchased from DS Pharma Biomedical Co., Ltd. (Osaka, Japan), and the HCT 116 and HT-29 human colon cancer cell lines were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). SW620 and COLO205 cells were maintained via implantation into the right axilla of nude mice at 3-week intervals. For in vitro experiments, the cells were cultured at 37 °C in a humidified atmosphere with 95% air and 5% CO2. Dulbecco’s modified Eagle medium (DMEM) was used for SW620 and HCT 116 cells and Roswell Park Memorial Institute (RPMI) 1640 medium was used for HT-29 cells, supplemented with 10% fetal bovine serum (Sigma-Aldrich, St. Louis, MO, USA), 100 U/mL penicillin, and 100 µg/mL streptomycin (Nacalai Tesque, Inc., Kyoto, Japan). These cells were authenticated in 2014 by analyzing short tandem repeats.
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7

Culturing Cancer Cell Lines with Unnatural Amino Acids

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Human epithelial squamous carcinoma cell line, A431 (catalog no. 85090402), human breast adenocarcinoma cell line, MDA-MB-231 (catalog no. 92020424) and human colon adenocarcinoma cell line, SW620 (catalog no. 87051203) were purchased from Sigma-Aldrich, now Merck. All human cell lines were cultured in DMEM (Gibco; Life Technologies) containing ʟ-glutamine, 4.5 g l−1d-glucose, 110 mg l−1 sodium pyruvate supplemented with 10% (vol/vol) FBS (Gibco; Life Technologies), and a cocktail of penicillin and streptomycin (Sigma-Aldrich). This medium will be referred to as ‘complete medium’. Cells were grown in 5% CO2 at 37 °C. Bpa (catalog no. 242935) was purchased from Fluorochem, and AzF (catalog no. F-3075.0005) and BocK (catalog no. E-1610.0005) were purchased from BACHEM. O-(2-Nitrobenzyl)-ʟ-tyrosine (pcY) was synthesized using procedures similar to those reported earlier33 (link).
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8

Cultivation of Colon Cancer Cell Lines

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The colon cancer cell lines used in this study were purchased from American Type Culture Collection. These cell lines included Lovo, SW620, HT-29, HCT-8 and HCT-116. HEK293 cells were obtained from the Cancer Research Institute of Central South University, China. The HT-29 and HCT-8 cells were cultured in RPMI-1640 medium (Sigma-Aldrich Corp., St. Louis, MO, USA); the Lovo cells were cultured in F-12K medium (Sigma-Aldrich Corp.); the SW620 cells were cultured in L-15 medium (Sigma-Aldrich Corp.); the HCT-116 cells were cultured in McCoy's 5a medium (Sigma-Aldrich Corp.); and the HEK293 cells were cultured in modified Eagle's minimal essential medium (Sigma-Aldrich Corp.). All media were supplemented with 10% fetal bovine serum and 1% antibiotic/antimycotic solution (Biowest, Nuaille, France). All of the cell lines were cultured in 5% CO2 at 37°C in incubators at 100% humidity.
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9

Culturing Colorectal Cancer Cell Lines

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CACO-2 cells, derived from an early stage colon adenocarcinoma, and paired cell lines SW480 and SW620 (primary tumor and lymph node metastasis pair respectively from the same patient) were purchased from the American Type Culture Collection, ATCC (www.atcc.org), and maintained in a 37°C incubator at 5% CO2. SW480 and SW620 cells were cultured in Leibovitz media (L-15) (Sigma Aldrich) supplemented with 10% Fetal Bovine Serum (FBS) (Gibco, Invitrogen), 1% penicillin/streptomycin (Sigma Aldrich) and 1% L-glutamine (Gibco, Invitrogen). CACO-2 cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM) high glucose (Sigma Aldrich) supplemented with 10% FBS, 1% penicillin/streptomycin and 1% MEM Non-essential Amino Acid Solution (Sigma Aldrich).
Copper-bis-belinostat [Cu(Bel-1H)2] was synthesized in-house as described in the Supplementary Methods. belinostat glucuronide, the external standard, was purchased from ChemSpace SIA and belinostat was purchased from Sigma Aldrich. All drugs were dissolved in dimethyl sulfoxide (DMSO for cell culture) (Sigma Aldrich).
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10

Cell Culture Conditions for Cancer and Healthy Cell Lines

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HT-29, HCT 116, SW620, CCD-18Co and CCD-1072Sk cell cultures were purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). HT-29 and SW620 cells were cultured in complete RPMI-1640 medium (Sigma-Aldrich, St. Louis, MO, USA), HCT 116 cells in McCoy’s medium (PAN-Biotech GmbH, Aidenbach, Germany), CCD-18Co and CCD-1072Sk in MEM medium (Biosera, Nuaille, France). All cultivation media were supplemented with 10% fetal bovine serum (Biosera, Nuaille, France) and antibiotics (1% antibiotic-antimycotic 100 × and 50 μg/mL gentamicin; Biosera, Nuaille, France).
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