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15 protocols using goat anti gata4

1

Western Blot Analysis of Gata4, Gata6, Sox7, Sox17, and Cdk2

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Western blot was done as described previously [34 (link)]. The antibodies used were goat anti-Gata4 (Santa Cruz), goat anti-Gata6 (R&D), goat anti-Sox7 (R&D), goat anti-Sox17 (R&D) and rabbit anti-Cdk2 (Santa Cruz).
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2

Immunofluorescent Staining of Embryos

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Immunofluorescent staining was performed as previously described (Frankenberg et al., 2011 (link); Plusa et al., 2008 (link)). Fixed embryos were washed for 5 min in 0.1% Triton X-100 (Sigma) in PBS (PBX), permeabilized in 0.5% Triton X-100 (Sigma) and 100mM Glycine (Sigma) in PBS for 5 min, washed again in PBX for 5 min and blocked in 2% horse serum (Sigma) in PBS (blocking solution) for 1h at room temperature prior to antibody incubation. Embryos were incubated in primary antibodies diluted in blocking solution overnight at 4°C. Embryos were then washed three times for 5 min each in PBX and blocked again for 1h at room temperature prior to incubation with secondary antibodies. Secondary antibodies diluted in blocking solution were applied for 1h at 4°C. Embryos were then washed twice for 5 min each in PBX and subsequently incubated with 5μg/ml Hoechst 33342 (Invitrogen) in PBS for 5 min or until mounting for imaging. The following primary antibodies were used: goat anti-GATA6 (R&D Systems, 1:100), mouse anti-CDX2 (BioGenex, 1:200), rabbit anti-NANOG (CosmoBio, 1:500), goat anti-SOX17 (R&D Systems, 1:100), goat anti-GATA4 (Santa Cruz, 1:100), mouse anti-OCT4 (Santa Cruz, 1:100). Secondary Alexa Fluor-conjugated antibodies (Invitrogen) were used at a dilution of 1:500. DNA was visualized using Hoechst 33342.
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3

Immunoblotting of Cardiac Transcription Factors

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Cells were collected and lysed with RIPA buffer supplemented with protease inhibitor and phenylmethanesulfonyl fluoride (PMSF) for 15 minutes on ice. The lysate was then centrifuged at 16000 xg for 10 minutes and supernatant was added with 4x SDS loading buffer (Bio-Rad) and boiled for 5 minutes at 95 °C. Cleared lysate was run on a 4–15% gradient SDS-PAGE gel (Bio-Rad) and proteins were transferred to nitrocellulose membranes. After blocking with 5% milk, proteins were probed with primary antibodies: rabbit anti-GFP (Invitrogen, 1:500), rabbit anti-Mef2c (Abcam, 1:1000), goat anti-Gata4 (Santa Cruz Biotechnology 1:200), and goat anti-Tbx5 (Santa Cruz Biotechnology, 1:200). The target proteins were detected by chemiluminescence (ECL, Thermo Scientific). The membranes were then stripped with stripping buffer (Sigma) for 12 minutes and re-probed with mouse anti-β-actin (Santa Cruz Biotechnology, 1:1000) as the loading control. Quantification was performed with Image J.
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4

Immunofluorescence for GATA4 and pHH3

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The sections were deparaffinized and rehydrated, and then heated as described above for antigen retrieval. After incubation with Blocking One Histo, goat anti-GATA4 (1:200, Santa Cruz Biotechnology) antibody and rabbit anti-pHH3
(1:200) antibody were applied. The sections were washed in PBST and incubated with a mixture of donkey anti-rabbit IgG A488-conjugated antibody (1:400, Molecular Probes, Eugene, OR, U.S.A.) and donkey anti-goat IgG A568-conjugated
antibody (1:400, Abcam) for 60 min at RT. After being washed in PBST, the sections were coverslipped with Fluorsave (Calbiochem, San Diego, CA, U.S.A.). Immunofluorescence was detected using an Eclipse E600 microscope.
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5

Immunofluorescence Characterization of Pluripotent Markers

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Primary antibodies were those specific to rabbit anti-SALL4 (Abcam, 1:500), goat anti-SOX17 (R&D, 1:500), goat anti-GATA4 (Santa Cruz, 1:300), goat anti-GATA6 (R&D, 1:200), rabbit anti-Nanog (Sigma Aldrich, 1:200). The secondary antibodies used were FITC-conjugated secondary antibodies and TRITC-conjugated secondary antibodies (Jackson ImmunoResearch, 1:200).
Cells were fixed in 4% paraformaldehyde for 15 min at room temperature. Then, removing 4% paraformaldehyde and washing cells with PBS for two times. cells were permeabilized and blocked in PBS containing 0.2% Triton X-100 and 3% donkey serum for 1 h at room temperature. Then the cells were incubated with primary antibodies at 4 °C overnight. After washing three times with PBS, secondary antibodies (Jackson ImmunoResearch) were incubated at 37 °C for 1 h. The nuclei were stained with DAPI (Roche Life Science) for 5 min.
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6

Multilineage Differentiation Assay in Mouse Embryos

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All animal experiments were performed in accordance with Institutional Animal Care and Use Committee of IFOM (project #110/11) approved by the Italian Ministry of Health. Animals were kept on a 12/12-h light/dark cycle (lights on at 07:00 h) with free access to food and water. All animal handlings (sacrifice, etc.) were in accordance with the guidelines established by EU (directive 2010/63/EU). Mice were sacrificed by carbon dioxide euthanasia.
E3.5 embryos were flushed according to standard procedures [36 (link)] and cultured for 24h in M16 (Sigma) medium at 37°C and 0.5% CO2. E4.5 embryos were then fixed in PFA 4%, permeabilized in PBS/0.25% Triton X-100, blocked in PBS/0.05% Triton X-100/3% BSA and incubated with primary antibodies: mouse anti-Cdx2 (Biocare Medical CM226; 1:100), rabbit anti-Nanog (Cosmo Bio RCAB0002P-F, 1:50), goat anti-Gata4 (Santa Cruz sc-1237; 1:100), rabbit anti-cleaved Caspase-3 (Cell Signaling 9661; 1:200), followed by secondary antibodies: donkey anti-mouse A488-conjugated (Invitrogen; 1/100), donkey anti-rabbit CY3-conjugated (Jackson Labs; 1/400), donkey anti-goat CY5-conjugated (Jackson Labs; 1/400), and DAPI (0.5μg/mL) counterstaining. The images were acquired with a TCS SP2 AOBS confocal microscope (Leica Microsystem) and processed with ImageJ software.
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7

Detailed Immunofluorescent Staining Protocol

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Immunofluorescent staining was performed as previously described (Frankenberg et al., 2013 (link)). Details of antibodies used are provided in the Supplementary Experimental Procedures. The following primary antibodies were used: goat anti-SOX2 (R&D Systems) at a dilution of 1/50; mouse anti-OCT4 (Santa Cruz), goat anti-GATA4 (Santa Cruz), goat anti-GATA6 (R&D Systems) and goat anti-SOX17 (R&D Systems) at 1/100; rabbit anti-PKCζ (Santa Cruz), mouse anti-DAB2 (BD Transduction Laboratories) at 1/300 and mouse anti-CDX2 (BioGenex) at 1/200; rabbit anti-NANOG (CosmoBio), Mouse anti-GATA3 (Biolegend) and rabbit anti-EOMES (Abcam) at 1/500. Secondary Alexa Fluor-conjugated antibodies (Invitrogen) were used at a dilution of 1/500. DNA was visualized using 5 μg/ml Hoechst 33342 (Invitrogen) in PBS.
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8

Immunocytochemistry and Histochemistry Protocol

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A fraction of cultured cells were fixed on days 10, 15, and 20 with 4% polyoxymethylene for 15 min at room temperature. The fixed cells were then permeabilized by using 0.25% triton-X for 20 min, blocked with 5% normal donkey serum (Jackson, USA) for 1 hour, and stained with mouse anti-Ki67 (BD, USA) or rabbit anti-Phospho-Histone H3 (Cell signal, USA) or goat anti-Gata4 (Santa Cruz, USA) at 4 °C overnight. Subsequently, cells were incubated with secondary antibody donkey anti-goat Alexa Fluor 488 (1:500; Invitrogen, USA), or anti-rabbit Alexa Fluor 488 (1:500; Invitrogen, USA) or anti-mouse Alexa 488 (1:500; Invitrogen, USA), at 30 °C for 30 min. Cell nucleus was stained with 4,6-diamidino-2-phenylindole (DAPI). For visual inspection, Nikon Eclipse Ti-S Inverted Fluorescent Microscope was used. For the staining of hHVS (before and after decellularization) and myocardial tissues, they were first fixed with 4% polyoxymethylene, embedded in Tissue-Tek OCT (Sakura Finetek, Japan) and cut into 5 μm sections, and then stained also with chicken anti-GFP or rat anti-CD45 (1:200; Abcam, USA), followed by incubation with secondary antibody Donkey Anti-Chicken FITC (1:500; Abcam, USA) or anti-rat Alexa 488 (1:500; Invitrogen, USA) or/and hematoxylin and eosin (H&E).
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9

Immunophenotyping Stem Cell Markers

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Immunostaining assay was performed according to standard protocols. Briefly, the cells were fixed in 4% paraformaldehyde and washed with phosphate-buffered saline (PBS) (Invitrogen, 10010023) and then incubated in PBS containing 0.2% Triton X-100 (Sigma-Aldrich, 9002931) and 0.3% bovine serum albumin (Invitrogen, 11020021). Afterwards, the cells were incubated with primary antibodies including: goat anti-Oct4 (Abcam, ab27985), mouse anti-Nanog (Santa Cruz, sc-374001), mouse anti-Sox2 (Abcam, ab75485), goat anti-GATA4 (Santa Cruz, sc-1237), mouse anti-tyrosine hydroxylase (TH) (Abcam, ab6211), and goat anti- alpha fetoprotein (AFP) (Santa Cruz, sc-8108). The cells were then washed and incubated with goat anti-mouse IgG or rabbit-anti-goat IgG (Invitrogen). A concentration of 0.5 µg/ml diamino phenyl indole (DAPI) (Sigma, 28718903) was used for nuclei staining. Images were visualized using Nikon Ti inverted fluorescence microscope. Alkaline phosphatase (AP) staining was performed using the AP detection kit (Millipore, SCR004).
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10

Immunofluorescence Staining of Embryonic Cells

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Immunofluorescence was carried out as described previously 38 (link). Briefly, embryos were fixed in 4% paraformaldehyde, washed in PBS-T (PBS containing 0.1% Tween) and permeabilized with 0.5% Triton X-100 for 20 minutes. Embryos were incubated with primary antibodies in 3% BSA (Sigma) in PBS-T overnight at 4°C. The embryos were then washed twice in PBS-T and incubated with secondary antibodies (Invitrogen, AlexFluor; 1:400 in 3% BSA) for 2 hours before final washes in PBS-T and M2 and imaging in drops of M2 on glass-bottomed dishes. Primary antibodies used: goat anti-Sox17 (R&D Systems), mouse anti-Cdx2 (Biogenex), rabbit anti-Nanog (2B Scientific), goat anti-Gata4 (Santa Cruz), goat anti-Gata6 (R&D Systems), mouse anti-Oct4 (Santa Cruz), rabbit anti-pSmad1 (Cell Signaling) and rabbit anti-cleaved Caspase 3 (R&D Systems). DAPI was used as the nuclear counterstain in all experiments and all primary antibodies were used at a dilution of 1:200. Multi-channel images were acquired for multiple sections using a Leica SP5. Image processing and cell counting were performed with Fiji software (http://fiji.sc).
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