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8 protocols using human recombinant bfgf and egf

1

Dissociation and Culture of GBM Cells

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Parts of the surgical samples were enzymatically dissociated into single cells, following the procedures previously reported [13] (link). Dissociated GBM cells were cultured in neurobasal media with N2 and B27 supplements (0.5 each; Invitrogen) and human recombinant bFGF and EGF (25 ng/ml each; R&D Systems) (NBE condition).
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2

Glioblastoma Tumor Dissociation and Culture

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Following written informed consent, tumor samples classified as glioblastoma, based on the World Health Organization (WHO) criteria, were obtained from patients undergoing surgical treatment at the National Institutes of Health (NIH) or from Weill Cornell Medicine/New York Presbyterian Hospital in accordance with the appropriate Institutional Review Boards. Within 1–3 hours after surgical removal, tumors were washed in PBS and enzymatically dissociated into single cells. Tumor cells were cultured in NBE medium consisting of neurobasal medium (Thermo Fisher Scientific), N2 and B27 supplements (Thermo Fisher Scientific), and human recombinant bFGF and EGF (25 ng/mL each; R&D Systems) plus Heparin sodium and L-Glutamine. Regular mycoplasma screening was performed using the MycoAlert Detection Kit (Lonza Inc.). Detailed information for all resources provided in Table S2.
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3

Intracranial Transplantation of GBM Cells

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Animal experiments were approved by the Institutional Review Board and conducted in accordance with the “National Institutes of Health Guide for the Care and Use of Laboratory Animals” (NIH publication). Tumors were classified as GBM based on WHO criteria after review by pathologists. Parts of the surgical samples were enzymatically dissociated into single cells, following the procedures previously reported23 (link). Dissociated GBM cells were cultured in neurobasal media with N2 and B27 supplements (0.5X each; Invitrogen) and human recombinant bFGF and EGF (25 ng/ml each; R&D Systems) (NBE condition). Acutely dissociated GBM cells were stereotactically (2 mm left and 1 mm anterior to the bregma, 2 mm deep from the dura) injected into the brains of immune-compromised NOD/SCID Il2rg−/− (NOG) mice within 12 hours after surgery (2.5 × 104–1.0 × 105 cells in 10 ml HBSS for each mice, n = 4–19 for each sample). Mice with the reduction of the total body weight (>20%) were sacrificed, and brains were processed for paraffin or frozen section.
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4

Cell Line Characterization and Validation

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U87MG, T98G, U251MG, MDA-MB-231, PC-3, and H1299 were obtained from ATCC. Melanoma cancer cells VMM39 were from Daniel Gioeli (University of Virginia). GBM cell lines were cultured in MEM media. MDA-MB-231 was in DMEM high glucose media, PC-3 in DMEM low glucose, VMM39 and H1299 in RPMI media 1640. GIC lines G34, G44 and G528 were from Jakub Godlewski (Harvard Medical School) and Ichiro Nakano (University of Alabama). GIC lines JWL-022, JWL-131, JWL-578 and JWL-592 were from Jeongwu Lee (Lerner Research Institute). GICs were cultured in Neurobasal media with N2 and B27 supplements (0.5X), with the addition of human recombinant bFGF and EGF (25ng/ml each; R&D Systems). Short tandem repeat profiling was performed within the last six months to confirm the identity of established cell lines or to confirm the human origin of GIC lines lacking established STR profiles. All cell cultures were screened negative for mycoplasma by MycoAlertTM PLUS Mycoplasma Detection Kit (Lonza).
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5

Glioblastoma Tumor Sample Isolation

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Following informed consent, tumor samples classified as glioblastoma, based on the World Health Organization (WHO) criteria, were obtained from patients undergoing surgical treatment at the National Institutes of Health (NIH) or from Weill Cornell Medicine/New York Presbyterian Hospital in accordance with the appropriate Institutional Review Boards. Within 1–3 hours after surgical removal, tumors were washed in PBS and enzymatically dissociated into single cells. Tumor cells were cultured in NBE medium consisting of neurobasal medium (Thermo Fisher Scientific), N2 and B27 supplements (Thermo Fisher Scientific), and human recombinant bFGF and EGF (25 ng/mL each; R&D Systems) plus Heparin sodium and L-Glutamine. Regular mycoplasma screening was performed using the MycoAlert Detection Kit (Lonza Inc.).
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6

Limiting Dilution Assay for Glioblastoma Stem Cells

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LDA was performed in 96-well plates. Briefly, dissociated cells were seeded at a range of 1–100 cells per well with or without bFGF and EGF and then 400 pM IL1β was added every 3 days. Cells were incubated at 37°C for 2 weeks. At the time of quantification, each well was examined for the formation of tumor spheres. Stem cell frequency and p-values were calculated using a web-based tool “ELDA” (extreme limiting dilution analysis), which is available on the Walter and Eliza Hall Institute of Medical Research web site (http://bioinf.wehi.edu.au/software/elda/).
The 827 and GSC7-11 cells were generously provided by Drs. Jeognwu Lee and Erik Sulman. Both cell lines display characteristics of the Proneural subtype, as revealed by RNA-seq, by centroid analysis (827) [31 (link)], and by microarray analysis using the unsupervised algorithm (GSC7-11) [32 (link)]. GSCs were cultured in neurobasal media with N2 and B27 supplements (0.5× each; Invitrogen) and human recombinant bFGF and EGF (25 ng/ml each; R&D Systems) (NBE condition).
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7

Culturing Glioblastoma Stem Cells and Cell Lines

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Glioblastoma stem cells (GSCs) were cultured in NBE media consisting of neurobasal medium, with N2 and B27 supplements (Life Technologies), and human recombinant bFGF and EGF (25 ng/ml each; R&D Systems, Minneapolis, MN) as previous described34 (link). Human glioblastoma cell line U87 cells and human embryonic kidney (HEK) 293T cells were obtained from the American Type Culture Collection (ATCC; Manassas, VA) and cultured in Dulbecco's modified Eagle medium (DMEM) containing 5% fetal bovine serum (FBS), 1% L-glutathionine, and 1% penicillin–streptomycin (all from Life Technologies).
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8

Establishing Glioblastoma Cell Lines from Patient Samples

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320- and 1206-GSC cell lines were derived as previously described [15 (link)–17 (link)] and reused here. Briefly, after informed consent was obtained, tumor samples classified as glioblastoma, based on the World Health Organization (WHO) criteria, were collected from patients undergoing surgical treatment at the National Institutes of Health (NIH) or from Weill Cornell Medicine/New York Presbyterian Hospital in accordance with the appropriate Institutional Review Boards. Within 1–3 h after surgical removal, tumors were washed in PBS and enzymatically dissociated into single cells. Tumor cells were cultured in NBE medium consisting of neurobasal medium (Thermo Fisher Scientific), N2 and B27 supplements (Thermo Fisher Scientific), and human recombinant bFGF and EGF (25 ng/mL each; R&D Systems) plus Heparin sodium and L-Glutamine. Regular mycoplasma screening was performed using the MycoAlert Detection Kit (Lonza Inc.).
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