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11 protocols using substance p

1

MRGPRX2 Activation and Mast Cell Signaling

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All cell culture reagents and Indo-1 were purchased from Invitrogen (Gaithersburg, MD). Substance P, Fluorescent-labeled Substance P (FAM-SP), hBD3 and icatibant were purchased from Anaspec (Fremont, CA). Human hemokinin-1 was purchased from Alpha Diagnostic (San Antonio, TX). MRGPRX2 plasmid encoding hemagglutinin (HA)-tagged human MRGPRX2 in pReceiver-MO6 vector was obtained from GeneCopoeia (Rockville, MD). Amaxa transfection kit (Kit V) was purchased from Lonza (Gaithersburg, MD). PE-Anti human MRGPRX2 was obtained from Biolegend (San Diego, CA). QuikChange II Site-directed mutagenesis kit was purchased from Agilent Genomics (Santa Clara, CA).
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2

Antibody Reagents for Cell Signaling

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Anti-MITF (clone D5G7V) and phospho-p44/42 MAPK antibodies were from Cell Signaling Technology (Danvers, MA, USA). Anti-phospho-MITF (Ser73/180) and mouse anti-αTubulin antibodies were from Sigma-Aldrich (St. Louis, MO, USA). Rabbit anti-Lamin β1 antibody was purchased from Abcam (Cambridge, UK). PE anti-human FcϵRI antibody was obtained from Thermo Fisher Scientific (Waltham, MA, USA). Anti-LysRS (D-4) and PE anti-human CD117 were obtained from Santa Cruz Biotechnology, Inc (Santa Cruz, CA, USA). PE anti-human MRGPRX2 was from Bio Legend (San Diego, CA, USA ). APC anti-human CD63 and FITC Annexin V were from ImmunoTools GmbH (Friesoythe, Germany). Biotinylated human IgE was from Abbiotec (San Diego, CA, USA), and streptavidin was from Sigma (St. Louis, MO, USA). Substance P was from AnaSpec (Fremont, CA). ML329 was obtained from Axon Med Chem (Groningen, The Netherlands). Morphine was obtained from B. Braun Medical S.A (Spain), the muscle relaxant atracurium was from Pfizer Inc (NY, USA), meglumine amidotrizoate was from Juste Laboratories (Spain), and the vancomycin antibiotic was from Normon (Spain).
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3

Evaluation of Biologically Active Compounds

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Compound 48/80, vespid mastoparan, rocuronium, tubocurarine, ciprofloxacin, levofloxacin, moxifloxacin, and ofloxacin were from Sigma. Cortistatin was from Tocris Biosciences. PAMP (9-20) was custom synthesized and purified to ≥98% by Genscript. Leuprolide was from Genscript. Substance P, kallidin, mastoparan, cetrorelix, octreotide, sermorelin (growth hormone releasing factor 1-29), icatibant (HOE-140) were from Anaspec. Atracurium and mivacurium were from Santa Cruz Biotechnology. Recombinant human insulin was from Roche. Goat anti-mouse IgE (Ab9162) was from Abcam.
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4

Evaluation of Biologically Active Compounds

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Compound 48/80, vespid mastoparan, rocuronium, tubocurarine, ciprofloxacin, levofloxacin, moxifloxacin, and ofloxacin were from Sigma. Cortistatin was from Tocris Biosciences. PAMP (9-20) was custom synthesized and purified to ≥98% by Genscript. Leuprolide was from Genscript. Substance P, kallidin, mastoparan, cetrorelix, octreotide, sermorelin (growth hormone releasing factor 1-29), icatibant (HOE-140) were from Anaspec. Atracurium and mivacurium were from Santa Cruz Biotechnology. Recombinant human insulin was from Roche. Goat anti-mouse IgE (Ab9162) was from Abcam.
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5

Arginine Residue Labeling and Analysis

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Bradykinin, neurotensin, and substance P were
purchased from AnaSpec (Fremont, CA). Recently, we have reported an
assessment of chemical labeling method to identify functional/reactive
arginine residues of proteins by MS utilizing two widely used arginine-reactive
reagents.22 (link) We followed the same labeling
protocol mentioned in our recently published article.22 (link) For each peptide sample (1 mM, 5 μL), we added 5
μL of 30 mM CHD-Azide reagent in 200 mM sodium hydroxide solution.
The reaction was allowed to continue for 2 h at 37 °C under agitation.
After the reaction, the samples were dried in a SpeedVac at 30 °C
for 1 h. The two dried samples were then reconstituted in 0.1% FA.
After that, samples were vortexed and desalted using Thermo Scientific
Pierce C18 tips. Desalted samples were then used for the analysis
after diluting with 1:1 MeOH/H2O with 2% acetic acid.
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6

Biotin-Labeling and Avidin Enrichment

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Ribonuclease
A from bovine pancreas (RNase A), ubiquitin from bovine erythrocytes,
ammonium bicarbonate (NH4HCO3), formic acid
(FA), sodium hydroxide (NaOH) pellets, acetonitrile, and iodoacetamide
(IAM) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Biotin-PEG4-alkyne
was from Click Chemistry Tools, Scottsdale, AZ. For proteolysis, sequencing-grade-modified
trypsin was purchased from Promega (Madison, WI, USA). For disulfide
bond reduction, dithiothreitol was obtained from Bio-Rad (Hercules,
CA). Pierce C18 Tips from Thermo Fisher Scientific (Rockford, IL,
USA) were used to desalt the samples. Phosphate-buffered saline (PBS)
was from VWR, Suwanee GA. Three model peptides bradykinin, neurotensin,
and substance P were purchased from AnaSpec (Fremont, CA). To remove
excess CHD-Azide, Pierce concentrators [3k MW cutoff (MWCO)] were
utilized. Pierce UltraLink monomeric avidin was obtained from Thermo
Scientific (Rockford, IL). All sodium dodecyl sulfate-polyacrylamide
gel electrophoresis supplies were purchased from Bio-Rad (Hercules,
CA).
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7

Comprehensive Antibody Immunoassay Protocol

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Mouse antibodies, α-MYO1F C5, α-KIT (clone Ab81), α-DRP1 C5, α-pAKT (Ser 473) were purchased from Santa Cruz (Santa Cruz Biotechnology, Inc. Santa Cruz, CA, USA). α-pDRP1 (Ser616) and α-pERK (Thr202/Tyr204) were from Cell Signaling (Cell Signaling Technology, Denvers, MA. Mouse α- Cdc42 from Cytoskeleton (Cytoskeleton Inc., Denver, CO). Goat α-mouse alexa-647 and goat α-rabbit alexa-488 were from Life Technologies (Carlsbad, CA), mouse α-human- Fc RI-PE from eBioscience (San Diego, CA). PE anti-human MRPGRX2 clone K125H4 was from Biolegend (Biolegend, San Diego, CA). TOM20 rabbit polyclonal Ab was from Proteintech (Rosemont, IL) and mouse monoclonal CD63-APC (clone MEM-259) was from Immunotools GmbH (Friesoythe, Germany).
Biotinylated human IgE (IgEB) was obtained from Abbiotec (San Diego, CA). Anti- mouse-HRP Ab was obtained from DAKO (Carpinteria, CA). Streptavidin, puromycin, doxycycline hyclate, mouse α-tubulin (DM1A) and anti-β-actin (clone AC-40) were purchased from Sigma (Sigma- Aldrich, St. Louis, MO). Substance P was from AnaSpec (Fremont, CA).
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8

Quantitative Radioligand Binding Assay

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After expression, 1 × 104 cells were incubated at 4 °C for 2 h in 200 μL binding buffer (50 mM Tris-HCl pH 7.4 (at 4 °C), 1 mM EDTA, 0.1% (w/v) BSA, 40 μg/mL bacitracin) containing [3H]-labelled ligand (NTR1 variants: 15 nM [3,11-tyrosyl-3,5-3H(N)]-neurotensin (Perkin Elmer); NK1R variants: 15 nM [leucyl-3,4,5-3H(N)]-substance P (Perkin Elmer); KOR1 variants: 15 nM [15,16-3H]-diprenorphine (Perkin Elmer)). Nonspecific binding was determined in the presence of a 1000-fold excess of unlabelled ligand (NTR1 variants: 10 μM neurotensin (8–13) (AnaSpec); NK1R variants: 15 μM substance P (AnaSpec); KOR1 variants: 15 μM diprenorphine (Tocris Bioscience)). After incubation, cells were filtered on MultiScreen filter plates (Merck Millipore) with a vacuum manifold, filters were washed four times with cold 50 mM Tris-HCl pH 7.4 (at 4 °C), transferred to Isoplate-96 scintillation plates (Perkin Elmer), dried at 65 °C for 2 h, and 200 μL Optiphase Supermix scintillation cocktail (Perkin Elmer) was added. Counting was performed on a 1450 MicroBeta Plus liquid scintillation counter (Wallac). Measured CPM values were normalized to the number of cells used in the assay and the nonspecific signal was subtracted from the total signal.
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9

Characterization of MRGPRX2 Signaling

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All cell culture reagents were obtained from Invitrogen (Gaithersburg, MD, USA). Amaxa transfection kit (Kit V) was obtained from Lonza (Gaithersburg, MD, USA). Q5 Site-Directed Mutagenesis Kit was from New England BioLabs (Ipswich, MA). Substance P (SP) was from AnaSpec (Fremont, CA, USA). Pertussis toxin (PTx) was from List Biological Laboratories (Campbell, CA, USA). YM-254890 was from Wako Chemicals (Richmond, VA, USA) and p-nitrophenyl-N-acetyl-β-D-glucosamine (PNAG) was from Sigma-Aldrich (St. Louis, MO, USA). Fura-2 acetoxymethyl ester was from Abcam (Cambridge, MA, USA). PE-conjugated anti-MRGPRX2 antibody was from BioLegend (San Diego, CA, USA). MRGPRX2 plasmid encoding hemagglutinin (HA)-tagged human MRGPRX2 in pReceiver-MO6 vector was obtained from GeneCopoeia (Rockville, MD, USA).
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10

Mast Cell Activation via MRGPRX2

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All cell culture reagents were purchased from Invitrogen (Carlsbad, CA, USA); recombinant human stem cell factor (rhSCF), mouse interleukin-3 (mIL-3), and mouse stem cell factor (mSCF) were from PeproTech (Rocky Hill, NJ, USA); p-nitrophenyl-N-acetyl-β-D-glucosamine (PNAG) was from Sigma-Aldrich (St. Louis, MO, USA) and Fura-2 acetoxymethyl ester was from Abcam (Cambridge, MA, USA). Substance P (SP) was from AnaSpec (Fremont, CA, USA). Phycoerythrin-conjugated anti-MRGPRX2, FITC-conjugated anti LAMP-1 and all other flow cytometry antibodies were from Biolegends (San Diego, CA, USA). Rabbit anti-Orai1, Orai2 and Orai3 antibodies from Alomone lab (Rockville, MD, USA), anti-ERK1/2, anti-phospho-ERK1/2 (Thr-202/Tyr-204), anti-phospho-Akt (Ser-473), anti-Akt, β-Actin and goat anti-rabbit IgG-HRP were obtained from Cell Signaling Technology (Danvers, MA, USA). SuperSignal West Pico Maximum Sensitivity Substrate was from Thermo Scientific (Rockford, IL, USA). Synta66 (3-fluoro-pyridine-4-carboxylic acid (2,5-dimethoxy-biphenyl-4-yl)-amide) was purchased from Calbiochem (San Diego, CA, USA). ELISA kits for mouse TNF-α, and human TNF-α, IL-8, CCL-3 were obtained from R&D system (Minneapolis, MN, USA). BCA Protein Assay Kit was obtained from Pierce Biotechnology (Rockford, IL, USA).
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