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Dharmafect 4 reagent

Manufactured by Thermo Fisher Scientific
Sourced in United States

DharmaFECT 4 is a transfection reagent designed for efficient delivery of siRNA, miRNA, and other nucleic acids into a variety of mammalian cell types. It is optimized to facilitate the uptake of nucleic acids and enable effective gene silencing or modulation.

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5 protocols using dharmafect 4 reagent

1

Dissecting SHARPIN, HOIP, TRAF2, TRAF6 Pathways

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The siRNAs against human SHARPIN, HOIP, TRAF2, TRAF6 were obtained from Thermo Scientific and transfected using DharmaFECT 4 reagent using manufacturer’s instructions. After 48h of siRNA transfection, the cells were used for functional analyses (ubiquitination, co-immunoprecipitation and RIPA). A non-targeting siRNA (Thermo Scientific, D-001810-10-05) was used as a control and was transfected using the same protocol as above.
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2

Efficient siRNA Knockdown in Cell Lines

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Small interfering RNA (siRNA) duplexes were purchased from IDT (Integrated DNA Technologies, Iowa City, IA, U.S.A.) individually or as sets of three within TriFECTa kits and transfected into MDA-MB-231 and HeLa cells at 5 nM using 1–2 ul DharmaFECT 4 reagent (Thermo Scientific, Pittsburgh, PA, U.S.A.) per ml final volume in HMEC cultures with DharmaFECT 1. RNA was isolated using the RNAeasy Mini Plus Kit (QIAGEN) and RNA concentrations determined on a Nanodrop 2000 Spectrophotometer (Thermo Scientific, Wilmington, DE, USA). SuperScript III First Strand Synthesis SuperMix (Life Technologies) was used to make cDNA from isolated RNA as per manufacturer's directions using oligo(dT) primers. Quantitative real time PCR (qPCR) using validated PrimerPCR SYBR Green Assay human primer sets (Bio-Rad, Hercules, CA, U.S.A.) were performed using a StepOnePlus Real-Time PCR system (Applied Biosystems/Life Technologies) and quantified by the ΔΔCt method. Knockdown efficiency was consistently greater than 80% after 48 hours determined by qPCR normalized to HPRT1 expression. More detailed information regarding siRNAs is given in Table S2.
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3

Inhibition of MST1 Expression in Jurkat T Cells

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MST1 expression was inhibited by transfection with a pool of four MST1-specific siRNAs (Thermo Fisher Scientific) into Jurkat T cells using the DharmaFECT4 reagent (Thermo Fisher Scientific). A non-targeting pool of four individual siRNAs was used as a control. MST1 protein levels were determined by immunoblotting 72 h after transfection. Transfected cells were treated and processed as per the standard protocols.
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4

Gene Silencing Using siRNA Pools

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Cyclin B1, Bcl-xl, Mcl-1 and c-MET were silenced by small interfering RNA (siRNA) or non-coding siRNA. Specific siRNA SMARTpool® sequences consist of 4 pooled 21-nucleotide RNA oligonucleotides forming a 19-bp duplex core with 2-nucleotide 3 overhang and were purchased from Dharmacon, Inc. (Thermo Scientific, Rockford IL USA). For transfection the DharmaFECT4 reagent (Thermo Scientific, Rockford IL USA) was used according to the manufacturer's instructions.
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5

Knockdown of AMPKα1 in Hepatic Cancer

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In order to reduce AMPKα1 protein expression in hepatic cancer cells, specific 21 nucleotide double stranded RNA (siRNA) and a scrambled control were designed as we previously described [37 (link)], and synthesized using an Ambion commercial kit SilencerTMsiRNA (Thermo Fisher Scientific). The following sequence, chosen according the guidelines described by Elbashir et al. [38 (link)], which targets AMPKα1 nucleotides 1842-1864 was used: AACATTTCTGCATATTAGGCTCCTGTCTC. Cells were transfected using Dharmafect 4 reagent (Thermo Fisher Scientific). Experiments were performed 24 h after transfection, and the specific decrease in AMPKα expression was confirmed by immunoblotting.
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