The largest database of trusted experimental protocols

27 protocols using anti hif 1α

1

Protein Expression and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following treatment, cells were washed on ice with ice-cold 1× PBS with protease inhibitor cocktail (Thermo Scientific). Cell were lysed with lysis buffer containing 1× protease inhibitor cocktail (Thermo Scientific), NaF (4 mM), Na3VO4 (20 mM), NaCl (150 mM), β-glycerophosphate (50 mM), and DTT (0.2 mM). Total protein was resolved on 10% SDS-polyacrylamide gels and transferred to PVDF membranes (Fisher Scientific). Membranes were blocked with 5% nonfat dry milk in TBST (50 mM Tris pH 7.6, 150 mM NaCl, 0.1% Tween 20) and incubated overnight at 4 °C in 5% nonfat dry milk in TBST with anti-HIF-1α (1:500, R&D Systems); anti-CAIII (1:500, SCBT), anti-Parp1 (1:1000, Cell Signaling), anti-Cas3 (1:1000, Cell Signaling), or anti-β-tubulin (1:5000, DSHB) antibodies. Specificity of all antibodies has been validated by the manufacturers using siRNA or negative control IgG. Immunolabeling was detected using ECL reagent (LAS4000, GE Life Sciences). Densitometric analysis was performed using ImageQuant TL (GE Life Sciences). All quantitative data is represented as mean ± SE, n ≥ 4 independent experiments.
+ Open protocol
+ Expand
2

Quantification of Hypoxia-Induced Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were placed on ice immediately following treatment and washed with ice-cold PBS. Wash buffer and lysis buffer contained 1x protease inhibitor cocktail (Thermo Scientific), NaF (4 mM), Na3VO4 (20 mM), NaCl (150 mM), b-glycerophosphate (50 mM), and DTT (0.2 mM). Total cell proteins were resolved on 10% SDS-polyacrylamide gels and transferred to PVDF membranes (Fisher Scientific). Membranes were blocked with 5% nonfat dry milk in TBST (50 mM Tris pH 7.6, 150 mM NaCl, 0.1% Tween 20) and incubated overnight at 4°C in 5% nonfat dry milk in TBST with the anti-HIF-1α (1:500, R&D Systems); anti-CAIX (1:1000, Novus Biologicals), anti-CAXII (1:1000, Cell Signaling), anti-MCT4 (1:1000, Novus Biologicals), or anti-®-tubulin (1:5000, DSHB) antibodies. Specificity of all antibodies has been validated by the manufacturers using siRNA or negative control IgG. Immunolabeling was detected using ECL reagent (LAS4000, GE Life Sciences). Densitometric analysis was performed using ImageQuant TL (GE Life Sciences).
+ Open protocol
+ Expand
3

Western Blot Analysis of Renal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Renal tissues were homogenized in lysis buffer (Cowin Bioscience, China), and the protein concentrations were measured using a BCA Protein Assay Kit (Biosharp life science, China). Protein samples (20 μg/lane) were then subjected to SDS-PAGE electrophoresis, transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA), and blocked in 5% non-fat dry milk at room temperature for 90 min. The membranes were incubated with anti-TGF-β (1:1000 dilution, Abcam, Cambridge, UK), anti-HIF1α (1 μg/mL, R&D systems, Minneapolis, MN, USA), anti-PHD1 (1:1000 dilution, Proteintech, Wuhan, China), anti-PHD2 (1:500 dilution, Proteintech, Wuhan, China), and anti-β-actin (1:5000 dilution, Proteintech, Wuhan, China) at 4°C overnight and then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (Proteintech, Wuhan, China) at room temperature for 90 min. The immune reactivity was detected by an enhanced chemiluminescence reagent (Biosharp life science, Hefei, China).
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fixed joint tissues embedded in paraffin were cut into 7-µm-thick sections, dewaxed using xylene, dehydrated through an alcohol series, and stained with hematoxylin and eosin, safranin O, or toluidine blue to detect proteoglycans. Endogenous peroxidase activity was quenched with methanol/3% H2O2. Immunohistochemistry was performed using a Vectastain ABC kit (Vector Laboratories, Burlingame, CA, USA). Sections were incubated with specific antibodies (i.e., anti-TNFα, anti-IL-1β, anti-IL-6, anti-IL-17, anti-RANKL, anti-VEGF, and anti-HIF-1α; all from R&D Systems) overnight at 4 °C. The tissue sections were then incubated with a biotinylated secondary antibody, followed by a streptavidin-peroxidase complex for 1 h. The final color product was developed using diaminobenzidine as the chromogen (DAKO, Carpinteria, CA, USA).
+ Open protocol
+ Expand
5

Immunohistochemistry Analysis of Kidney Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
For IHC, paraffin-embedded kidney sections (3 µm) were deparaffinized, rehydrated, blocked, and incubated with various primary antibodies, including anti-CD68 (1:500, Boster Biological Technology, Wuhan, China), anti-Nephrin (1:100, Affinity Biosciences, Cincinnati, OH, USA), anti-TGF-β (1:500, Abcam, Cambridge, UK), and anti-HIF1α (5 μg/mL, R&D systems, Minneapolis, MN, USA) overnight at 4°C. Sections were then washed with PBS containing 0.1% Triton and incubated with HRP-conjugated secondary antibody (ZSGB Biotechnology, Beijing, China) for 1 h at room temperature. After the final wash with PBS/triton, sections were stained with DAB (ZSGB Biotechnology, Beijing, China) substrate and hematoxylin. The images of stained sections were acquired by bright field microscope, and quantitative analysis of positive staining areas (%) in images was done using ImageJ (National Institutes of Health, Bethesda, MD). Identical staining without the primary antibody was used as a negative control.
+ Open protocol
+ Expand
6

Western Blot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following anti-human antibodies were used for western blot analysis: anti-HK2 at a dilution of 1 : 500, anti-ERK2 at 1 : 1000 and anti-AKT at 1 : 500 (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), anti-HIF-1α (R&D Systems, Inc., Minneapolis, MN, USA) at 1 : 1000 and anti-β-tubulin (Sigma-Aldrich, St Louis, MO, USA) at 1 : 2000. Horseradish peroxidase-conjugated goat anti-mouse and rabbit anti-goat antibodies were used according to the manufacturer's instructions (Jackson Immuno Research Laboratories, West Grove, PA, USA).
+ Open protocol
+ Expand
7

Quantifying AMPK and ACC Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lymphocytes were lysed in F buffer (1×107 cells mL−1) and subjected to immunoblot analysis as described previously [3] , [10] . Total ACC and ACCS79 were detected by bi-fluorometric analysis using the Odyssey LICOR system and ImageJ software was used for integral signal quantification. Anti-AMPKα1 and anti-ACCS79 were kindly provided by Grahame Hardie, University of Dundee, U.K. Anti-Smc1 was purchased from Bethyl Laboratories Inc and anti-Hif1α was obtained from R&D Systems. Anti-Glut1 was a gift from Geoff Holman, University of Bath, U.K. [19] , [24] (link). All other antibodies for immunoblotting were obtained from Cell Signaling Technology. Antigens were detected using suitable HRP-conjugated secondary antibodies and enhanced chemoluminescence.
+ Open protocol
+ Expand
8

Immunoblotting Analysis of Hypoxia Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were solubilized in lysis buffer (Cell Signaling Technology, Danvers, MA, USA) containing 1 mM phenylmethylsulfonyl fluoride for 1 h at 4 °C. Cell lysates were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto a polyvinylidene difluoride transfer membrane. The membranes were stained using the following primary antibodies: anti-HIF-1α, anti-HIF-2α (1:1000 dilution; both from R&D Systems, Minneapolis, MN, USA), anti-CXCR4 (1:1000 dilution; Abcam, Cambridge, UK), anti-Akt (1:1000 dilution; Santa Cruz Biotechnology, Dallas, TX, USA), anti-phospho-Akt, anti-extracellular signal-regulated kinases (Erk) 1/2, anti-phospho-Erk1/2 (1:1000 dilution; all from Cell Signaling Technology, Danvers, MA, USA), and anti-β-actin (1:5000 dilution; Sigma-Aldrich, St. Louis, MO, USA). The secondary antibodies used were anti-rabbit IgG-horseradish peroxidase (HRP), anti-mouse IgG-HRP (1:3000 dilution; both from Cell Signaling Technology, Danvers, MA, USA), and anti-goat IgG-HRP (1:2000 dilution; R&D Systems, Minneapolis, MN, USA). The membranes were exposed to the ChemiDoc™ Touch Imaging System (Bio-Rad, Hercules, CA, USA) using an enhanced chemiluminescence detection system. Signal intensity was analyzed with Quantity One software (Bio-Rad, Hercules, CA, USA).
+ Open protocol
+ Expand
9

Hypoxia and Proliferation Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
PCL (Mn = 700,000–900,000), sodium orthovanadate, sodium fluoride, β-glycerophosphate, DOX (doxorubicin), and BrdU were purchased from Sigma-Aldrich (St. Louis, MO, USA). Pimonidazole hydrochloride was obtained from Hypoxyprobe Inc. (Burlington, MA, USA). The following antibodies were used for the study: Alexa Fluor 594 phalloidin (Thermo Fisher Scientific, Waltham, MA, USA), anti-HIF-1α (R&D Systems, Minneapolis, MN, USA), anti-β-actin (Sigma-Aldrich, St. Louis, MO, USA), anti-F-actin (Santa Cruz Biotechnology, Dallas, TX, USA), anti-BrdU (Thermo Fisher Scientific, Waltham, MA, USA), anti-pimonidazole (Hypoxyprobe Inc.), anti-Ki67 (Cell Signaling Technology, Beverly, MA, USA), and cleaved caspase 3 (Cell Signaling Technology, Beverly, MA, USA). The following secondary antibodies were used: Alexa Fluor 488-conjugated anti-mouse (Thermo Fisher Scientific, Waltham, MA, USA), Alexa Fluor 594-conjugated anti-mouse (Thermo Fisher Scientific, Waltham, MA, USA), Alexa Fluor 594-conjugated anti-rabbit (Thermo Fisher Scientific, Waltham, MA, USA), and HRP-conjugated anti-mouse (Cell Signaling Technology, Beverly, MA, USA).
+ Open protocol
+ Expand
10

Immunoblot Analyses of Protein Targets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblot analyses were carried out as previously described [15 (link)]. We used rabbit polyclonal anti-ALAD (Abcam, Cambridge, UK), mouse monoclonal anti-Actin (MP Biomedicals, Santa Ana, California, USA), mouse monoclonal anti-COX4I1 (Santa Cruz Biotechnology, Dallas, Texas, USA), goat polyclonal anti-HIF-1α (R&D systems, Minneapolis, USA), rabbit polyclonal anti-HSP90 (Santa Cruz Biotechnology, Dallas, Texas, USA), and mouse monoclonal anti-PPOX (Abcam, Cambridge, UK) as the primary antibodies, depending on the purpose of the immunoblot analysis. For the second antibody, we used horseradish peroxidase (HRP)-conjugated anti-mouse IgG antibody, HRP-conjugated anti-rabbit IgG antibody (Cell Signaling Technology, Beverly, Massachusetts, USA), and HRP-conjugated anti-goat IgG antibody (Santa Cruz Biotechnology, Dallas, Texas, USA) at 1:3000 dilution.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!